Clone Read LE_HBa0009A08_SP6_3854

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0009A08_SP6_3854
Primer
SP6
ID from Seq. Facility
LE_HBa_009_A08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
676 trimmed for vector and quality, 865 raw
Genbank Accession
DU023919
Sequence
>LE_HBa0009A08_SP6_3854 (raw untrimmed)
AAAATTTACTCACGGCGTNACGCACCCTTTTAATGCTTCTCAAACANTTTCCTGCTCATAGAAATTATGGCATGCTGCCATGATGTCATGCTAAAGAGTT
TCCCAACATTTGATGAAAAAACCCATTGTGTAACCATCAGGTCCTGGGGCTTTGTCAATGGCACATAACTTCAAGCATTTAATAACTTCCTGCTCCTCAA
ACTTTGCCTGTAGTTGTGATCTTTCTTCCTCTTATATTGAAGGACAATTCACTAAATTTCCATCAGGTCTCCATTTTTCTGTTTCAAAATACAGTTTCTC
ATAAAACTTAATGATTTCCTCCCTTACTCTGTCTCGTTCTGTGATGATCTTTCCCTCTACTTCCAACTGGTCAATATGGTTGCTTCTTTTGTGGGCATTT
GCATTGTGGAAGAATTTTATATTGTTGTCTCCTTCCTTCAACCACTAAATTCTAGCCTTTGTCTCCAAACACATTCCTCATTTTTTATCAGTTCTTCGTA
CTCCATAAAGATCTCTACCTTCAAAGTAGCCTCTTCCTCTGCCAATGCTCTTTGGTCACACCTTTTGTAATTTGGCATCTTCCTGATGCAGATTCAATGA
TAATCTCTATTAACTTTGTCAAACACTCTGATGAACCAATTTTTCAACTTTTCCCTTTTTCATTAGTACCCAGAGTTTGAAACAAAAAGAGAAGTTAAAA
CTCATTCTATTCTCACACTATCACTCTGTTAGTACCCTTTTAGTCTACCACAGTTTTATGCATGGAATTAAAATCAGTAGCTATTAATTATGTTTTTTCT
GTATTCTCTGTAATAAGTCCTCTATAACCAGTGGTTTCCCCTGTACCAGTTGTTTGTTGGGTATT
>LE_HBa0009A08_SP6_3854 (trimmed for quality and cloning vector)
TCCTGCTCATAGAAATTATGGCATGCTGCCATGATGTCATGCTAAAGAGTTTCCCAACATTTGATGAAAAAACCCATTGTGTAACCATCAGGTCCTGGGG
CTTTGTCAATGGCACATAACTTCAAGCATTTAATAACTTCCTGCTCCTCAAACTTTGCCTGTAGTTGTGATCTTTCTTCCTCTTATATTGAAGGACAATT
CACTAAATTTCCATCAGGTCTCCATTTTTCTGTTTCAAAATACAGTTTCTCATAAAACTTAATGATTTCCTCCCTTACTCTGTCTCGTTCTGTGATGATC
TTTCCCTCTACTTCCAACTGGTCAATATGGTTGCTTCTTTTGTGGGCATTTGCATTGTGGAAGAATTTTATATTGTTGTCTCCTTCCTTCAACCACTAAA
TTCTAGCCTTTGTCTCCAAACACATTCCTCATTTTTTATCAGTTCTTCGTACTCCATAAAGATCTCTACCTTCAAAGTAGCCTCTTCCTCTGCCAATGCT
CTTTGGTCACACCTTTTGTAATTTGGCATCTTCCTGATGCAGATTCAATGATAATCTCTATTAACTTTGTCAAACACTCTGATGAACCAATTTTTCAACT
TTTCCCTTTTTCATTAGTACCCAGAGTTTGAAACAAAAAGAGAAGTTAAAACTCATTCTATTCTCACACTATCACT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.92475
Expected error %
0.170278
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA73798.1| Score 92 E Value 9e-18 Identity 11.20% Align. Length 410bp (60.65%) Frame 1
reverse transcriptase [Beta vulgaris subsp. vulgaris] pir||T14619 reverse transcriptase - beet retrotransposon (fragment)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAX95804.1| Score 76 E Value 7e-13 Identity 13.10% Align. Length 350bp (51.78%) Frame 1
retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0009A08
Clone
Clone name
hba-9a8
LE_HBa0009A08
C01HBa0009A08
P009A08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found