Clone Read LE_HBa0226C05_SP6_385705

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0226C05_SP6_385705
Primer
SP6
ID from Seq. Facility
LE_HBa_226_C05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1809 raw
Sequence
>LE_HBa0226C05_SP6_385705 (raw untrimmed)
TGGCGTCGGTTTGCGTCCACTCAGGACCGATAAAGGATACTTCGCCGCTAAGGAGTGTCTATTAGTATCGTATGCAACGTACTCACTCTTCCGCGGTGCA
CACAGGTATATATATAGCTCGCTCGTCTATTAATCTATCCGCTGTAGAGTAAATCACTATACACTCGCGCCTGCGTAGTCTTAATGCGGACATGTAAGAT
AATCGTAAGAGCCAGNCAACAATAGATAGTAGTAGACAAGGGTATACCTTCCTGACAGTCACAATCTCGTTTGCAGGGCGAAGCACCTGATATAATGTNT
CACTATCTGTCCTACGTACAGAGCAGAGCGTTACTAGTATGCGTTGGCATTATATCNTGTCCCAATGTCCTGCACGTTACGCATACTGTGTGTATCTGGA
CGCTCTTCTCTCTCTCTGTGTGTATATAGCGATCAGCGCGCANAGTCGGCACGTCTCTCTTATGTATGATGTAGAGATATCTCCTCTGGAGTACAATCTC
GGAGCTACCTATCTCAACGTAGCGCTGTGTAGGTCTGCCATGCTNCTGCTCCTGTGGCGATACGACGACTGTGTACTATGTGTCTGACTCGCTATTCGAC
AACTGACATTGCGAGCTGTCCTCAGNTGCACATGTTAGGAGACATGCTTATGCTTGGTATACTCGATCATGATCGTTACCATGATGATTATGTATCGTAT
CAGTTGCGTATAGTACGCATGTGCTGATCTCCTTGATCACTCCAAGCTGGCGAAGTACCCTATATCTTTTCCTATATACGAGTACGTGTGCCGATCACAT
GATCTTCGTACTATACGTGGCGTNTGTCAGGTTGCTATGCTACAGCCTTGTGATTCTCTCTCATCCTATTGTNTTGTCTTCGAATATACACTCGAACCAT
TTATCACAGATGTCTCTTCTCATAGCTCCGTGCAGTCCTATATCGATGCAGCGCTACCTCTCTCTTCTCGTCATTTGTACTGCTGACATGTCCATCATGC
GGTGCTACACTACACGCTGCTTAGCNCTCTAATTTTGTCTCATTAGATGCTTGACTTCTCTGTCGCAGCTTTGATATGGAACCTCCTCTTTGGCTATTCC
CATCTCACTCGCTTATCTGATGGACAATGTTTATACAATCATATGCTATGGCGGTGGTGTCACCATTTCCGCAACTCCTGAATGTGCGTGCNGAAACTCA
TAGCGTCTCAGTCGCATTAGACTGCTACGCACTTCTAAATTACGTCATATTGCATGTGCATGTATCTCACGGTCAGTTAGNTACAGACCCCTGCTCTTAA
TCTTCGCTGATATGATCGCAACCTGACTCTCTCTCTGTCCCTTNATCTAATGGCCTGTGGAACTAGGTGGTCTGTGCNGAGCTTACACCTACATCACCGC
ATTGATCTCTTTGTCTGTTCATCTGCCCTCCACTATTGACAGACACTATTCACGTCATACATAAGACTGTCCTTATAATGTACTGTACTCTAAGTTGTTC
TCTTGCTTCTTATGAGTGCATATTCTTCGTATCCATGATCTTACATCTCTGTTATCTGTACTCGTACATGTCATGACATGCTGAGATATATTCTACATGC
TCATTATCACCAGTGATTCATATTATGTATCTCTCCTTGTACTACTTAGCATATGTGGCGCCTACTTCATAAACANCTCTCTATCTCAGCGCTANTAACC
CTCGCTCTTACTTGCATATATCAGTCGCANCGCCCTCATATTTCTTCTCATGCCATTATTCTCTTACTCAGATGTATGTGACTAAACTCCAATGCACGCG
TGTGAGATA
>LE_HBa0226C05_SP6_385705 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0226C05
Clone
Clone name
hba-226c5
LE_HBa0226C05
P226C05
Clone type
BAC
Contamination
none
Estimated length
111,735
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found