Clone Read LE_HBa0114M03_SP6_38596

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0114M03_SP6_38596
Primer
SP6
ID from Seq. Facility
LE_HBa_114_M03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 933 raw
Sequence
>LE_HBa0114M03_SP6_38596 (raw untrimmed)
ACTGATTTTGATATTTTATTTATTTTGATATTTATTATCTCTGTTTTATTTGTTGTTTTTAGTTTATTTTATATGTCTTTTATGTTTGTTNTTTATGTGC
TTAACTCTCATTTAGTTATTTATTATTATATGTCTTTTTATATTGTTCACTTATAAATCTGACTAGTATCTTCTTATAATGTTTATCCCCTCGATATATA
TATTGTTATAATTTCTTAGTATTTATAAGTTTGTATTTTGTAATATATTTAATACTCTCTATGATATAATGTGAACGTAATTAATATTGATGGTGTATTT
TATTAATGTTTCTTATGTTCTTTCAATTACTATCTATTTAGATGCATTTATGGTTCTCTTCAATTAACATTGATATATTCATTTTATTTCTTATTATATT
GTGATATTTTATTTATTTTTTATTTTTTTTTTTCTTTGTTGATTAATTTATTGTGTTTTATATACTTCATGCTCATAAAGATAATAAAATACTTGAGAAT
TTGTATTATCGATATTGTTATANTATAGTTTTAAGATATTTTTTTTTTTTATTTTTTTTTTTTTTTTATTTTGTCGNTT
TTTTTTTTATGATGATCATTT
TATATTTTTATGATTATAGATAATAAATTATTTAACTGATTGAGTAGTAATGTTCACTTAGAAATGACCACTTTTGTAAATTAGTTGTATGAATGGAATA
TTATAAAACTTTTACATATTTAATTGTCAATTTTTTGATCTTAGTATGATCTACCTCTGTTTTTTATCAAATATTTATTATGACATCATAATAGATGACC
TCCTTGTTGATTCTATCTATTATTAGGTTTTCATAGAATTTTAATATTAACTTGATTAATCTATGATGTCAATAATTTTTATAATTTGTTTGGTGAACAT
TAATTTATGTTAAGATGGTCGNTAGGAAGCTTC
>LE_HBa0114M03_SP6_38596 (trimmed for quality and cloning vector)
TTTTTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.17816
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0114M03
Clone
Clone name
hba-114m3
LE_HBa0114M03
P114M03
Clone type
BAC
Contamination
none
Estimated length
120,775
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found