Clone Read LE_HBa0210F16_SP6_386609

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0210F16_SP6_386609
Primer
SP6
ID from Seq. Facility
LE_HBa_210_F16-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1622 raw
Sequence
>LE_HBa0210F16_SP6_386609 (raw untrimmed)
AAAACCGCTACTACGGNTANNNGNNTNNNNNCGNTCCCACAAAACTAACACATATTTTTTGACAACACCTCCTATAGTTAACCCTCTTTTGTCGACACAT
AGCCCTTCTTATCACAGCGCCATGTCATCGTCACGCAGTTTTTATAATCCATCCTAGAATGGATATTGCCCCTTTTTATAAAGAGGCACCCCATACTCTA
TCTGATTAGGTAATTATGTTGTATGTGGTGCTATGAATCTACATTTACGTTCAACTGTATTCACTGCGTGGNATGACTGCTGTCACTTATGTTACTAGAG
GACTTCTCGTTTTACCTTATCTGGACAATCGTGATAATCTATATTAATCTGCCGAGCTTCATCTCTTGTGTTTCACAGATCTATTCATATGTATTCTCTG
CTGCGCTATCTCATCCTGTTCTTCATAACGACGTGTACGTATAGCTTACTGATAGCCTCATCTCTCACTGACTAGCGCTCTGACTCACACCTACTTCCTT
CCTCATATGTTCATATACCCTATAGTAGGATGATCCATTCTCTGCTCTTTAGTATCAACCGCATCTATACCCTATTTTATCAATAGTTACCTATGAACCA
TACTTCTTCACTAATTTCAGATCTGCCTTTCCCCCATGCCTAGTATATTACACTAATGGTATATGTAATACGATTTCCGGGCGAATATGTATCTTCTCTG
CCTTCCAAGCCATTGCGTCTTGTCCTCCTACATTTCTTCACTACTATAATTAATATCATATATTCATATCTTTACTCATCCCTCTCCTTCGTACTACGTT
TCTTTCTTATTCTTACTCCTACGGCTCTAATGACTTATATCACTTGTACTACCGTATTCCTCTCGTACCTATTCTATTTATGCGCTAACTCACACTCTTG
TAACGCACGTCCCTAGACATCTCGTTACTCGCAGTTAGCGATTAACCTATAGCAATTGTTCTCTTCTCACTATGTATTGTTAATAGTCATACACACCACA
CACGATATCTCATATCCCATATGAACTCTAGTCATATACACTTACTCACTCATCCTCACCTCTATTTGGATACTATCTACTACTTCACCGACATCTTATG
CCCTTAGACATCATATCCAATTTCTAATTAATGATACAGTTCACTCACATTTACTCATCCTTCTCAATACTCTCAGTCCATCATATTGTATAATTCTATT
TCTCTCATATATATATCATATCGTAGTTACTCCAACTCATATCATCATCTCTGTACTCCTGCTCCTCTTCATATTTATATTCATATCATTTGAACCTGCT
ATGTGCCACTCTCTCATCTACTTAGCCACCTCCTCTGGTGCATTCTCTTTCTCTACACTATACCATATACACTCGCCTCCACCACACNGCAGCACTTATA
ATACTGTGCTATTCATTTTACGCATAGCATTACCATCAAACTCGTTCTTACTCTACTTCACTACCTATCTTACTCTTATATATCTCTTGATGCTTTATAT
ATGGATACTGATACTCCTAACTACTACTCAGTCTCTTAATCTTCTCCTCTCATTACGATCTTATTATCGTTCACTCCGACTTAAACTGTTGTCTTCGACC
TTTGTTATTTGTCATTTTATAN
>LE_HBa0210F16_SP6_386609 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0210F16
Clone
Clone name
hba-210f16
LE_HBa0210F16
P210F16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found