Clone Read LE_HBa0229J06_T7_389383

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0229J06_T7_389383
Primer
T7
ID from Seq. Facility
LE_HBa_229_J06-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 996 raw
Sequence
>LE_HBa0229J06_T7_389383 (raw untrimmed)
CGTCTCCAGATGAATCGCGCGGGTGGCAGCTGGGGATTTTTGTGGAGTACACCTCTTGACGTCTACGGGATTCGGGGATCTTATAATAGAGTGTCGTTTT
CGATTGTTGCCAGAGATTGTTCACGTAGTTTATGGACTCTATGGACACTACTATTTCATCTGAAGCTTCCGATAAAGATGAGAATCCCCCTCTAAAAAAA
TCGGACTAGCGGAGAACGACTCTTTTTGCTGGATGAACAATATGAGGCCCACCTCACACTACAGCTGCGCAGATATAGGTGTGCGCCGTACCTTAGTGTT
TTAATTAATAGCTCCTCCGGAGTGGCAACTCTTGCCGCAGATATCAATCGATGCTGAGTTTCACACTCTAACATATGGCTATGAATGATTGGGTATCTGC
CATGAACAGGCTGTCCCCCTCTCACAGAATGGATCACCGAATCGACTCATCCAGTCGTCTCTCGTAAACCAGAAAGACTGGCTTGCCATAGCATTCTCAG
CCCCTTCATGTGGTTGTTTCTGGCTGGGGGGCATTATATTAGCTTCTTCGATCCTGTAGGAGGTGCAAAAGTTCTCTGCTGTAGTGGACATTATCCTTTG
AAATAGAAATCTTCGCCTTTCCTCGGATTAAGTGAAATGGGACTCCTATATTCGATATCATAAAAACTCGGAGAACCCTCCTTTTGTCCTTTGAGCCTAT
AATATTCCTTCAAACTTTGTTACCCTATCCTGGGGGGTCCCAAAATAACAAATTCTTGGATATATCAAATGTCTGATGCGCTAAGAGCCCGTATTAAGGC

TTTCTCAAGGCTGTATAGCTTCCCAATGTTCTCAAATTTCCCTCCATTTTTTTCTGGCCTTATCGTACTCCGGGAATCCTTTTCAGGTTCTCCAATCTCC
GAGTGCCAAAAAACGTGGGAAATATCTCCGATTCAAATACGGGGGTTTAAATTTCCGCTCTTTAAATTTCTTTGCTCCATTTTAATACCCTGGAGC
>LE_HBa0229J06_T7_389383 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for contaminants
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.58518
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0229J06
Clone
Clone name
hba-229j6
LE_HBa0229J06
P229J06
Clone type
BAC
Contamination
none
Estimated length
101,639
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found