Clone Read LE_HBa0217L14_SP6_393573

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0217L14_SP6_393573
Primer
SP6
ID from Seq. Facility
LE_HBa_217_L14-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 980 raw
Sequence
>LE_HBa0217L14_SP6_393573 (raw untrimmed)
TTTCCCCTCCTTGCAGACATTGGCGTGTAGGACTTAGAACTCTGTTACAGCCAAAATAAGAGGGCCCTAGATTATGTTCTCTCATCGACTACCTATGGTA
AAAACCCTGGATTGCCGATGTTACTAAACTAGTTTTAAGATATCCTTGCTCTCGTTGTTACCTGAGGA
AAATGCTTTGAAGCGTCCACTATCATCACTGG
TCTTCCATTGCCAGCACAGCTGACATGCACATCTCCTTTCCCTTCTTCACCTCTAGTTTTAACTGACTCCTCTGAAAAGTCTGATACGCCAACTTCATGA
CACCATCTCTAACATGAAAGGGTGGAAAATACATCATTGTGAGTGTCCCTTCTTACTCTCTGAAGCTTACACTAACTATTATAACATTGGAAATGTACAG
CTCATATGCTCCTCTTAGGTAATTTCATGATGATTGAAATGAAGGATTGCCTCTCCCTATCGAGTCTACTGGTATGAACGAGGAAAAATACTCCCATTCT
TCTCACCATCTGACGATATGAATATGTTTGTACGTTTCCAATGCTCTTAACAATACTGGCCACACGTTTTATATTGCCTCTTCATGTACAAATCTTATGA
CACATTGTGTGACAACCATCATGGAGTTAGGAATAATTATCTATTCTCTCCACCTTCGGATACCATATGGAACGATGCATGTTTTTCAGAGAAGATTCAC
ATGTTCATGATAACTGATGCCGGTCGGGTGAACACATGATCACGTGCTAATCGGTCTTATAGAACCTTCATCTTACTTTCCTGAAAATAATACACTCACC
TATGACATTCGAACTATCATTGACGCTCGAGCAACATAAACCACATACATACAATGGACTTATGCAGGTTGGGAACCACATCCTCCCTTGGGAATTTCTA
TCCTTACTTAACACTGAATTTTCTTCTAATCGAGCCCTTCATCCCTTCAAAAGAAAAACCGCAATTTCCTTTTAATCCTT
>LE_HBa0217L14_SP6_393573 (trimmed for quality and cloning vector)
AAAT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.405688
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0217L14
Clone
Clone name
hba-217l14
LE_HBa0217L14
C03HBa0217L14
P217L14
Clone type
BAC
Contamination
none
Estimated length
79,658
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found