Clone Read LE_HBa0217N24_SP6_393796

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0217N24_SP6_393796
Primer
SP6
ID from Seq. Facility
LE_HBa_217_N24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
27 trimmed for vector and quality, 934 raw
Sequence
>LE_HBa0217N24_SP6_393796 (raw untrimmed)
NNNGGCTATTTGAAGTTCTTTAAGTCTTATTGCTTCTGAACCTCAATTGATTCGGGATTTTCTATGACCTTCATTGTCTAGTTAGACATGACAATTATTC
ATTATATGCAGTCAAGTTTTTCTTATGTGGCCAGATCAAAACAAACATTATTGCTTCCACCATATGAGAATATATCTCCAATAATGTCAT
GAATTTTGCA
ACCAACCTTTATGCCCCAAGGACACAAGTTATACCTGATATTTTACGATTATACCATCCGAGTATAATTTTTTGGAGCCCAATGGCATTATACCCTGATT
TATGGACCAACTGTTCCAAACATCACTTTTCCAAGTGAAACAATATACTTGAATCATGGCTTTTACTTGGCCCAACTTTTATCCGTGCACACCATATGAC
AAAATTGAATTCAAGAGTCTCGGCACAATTTATATTATTGAACGCCTCCTCGTAACAAAGATACCCTCGACCAATATTTGATATCGATTCTAACAAGACA
TAACTTATTGAGATCTCTTAAATTTTCGTTATTTTTTAGGTACCTGAACCTTTTTCGAGAATTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACT
TGGCTCATTATCATGACGCATATTGATCAGTTTCTCGTTCCTTCTTCAAGGAATTTTATTTTAAGAATCGAATGGGCTATTACGCTTTCGGCGTATCATA
GACTCTGTCCTTCAAGGACTTCATATTGTAGCACTTACAGGTGAATTATATCATAAGGTCAGTGCATTCCTCTGGTAACTGATTTACAAAATCATGTCAC
TGAATTATCCCTTGGACTTTAAATTTCCGCATTTATTTTATGGGGAGCGGGGGAATTTCTAATAAACCTCCCCCCGGATTTTTTGGTGGGCATTCAACCC
TCCCCCCATCGTTGGAAACATAAAATTCTTCTAC
>LE_HBa0217N24_SP6_393796 (trimmed for quality and cloning vector)
GAATTTTGCAACCAACCTTTATGCCCC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.511062
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0217N24
Clone
Clone name
hba-217n24
LE_HBa0217N24
P217N24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found