Clone Read LE_HBa0219L06_SP6_396487

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0219L06_SP6_396487
Primer
SP6
ID from Seq. Facility
LE_HBa_219_L06-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 1009 raw
Sequence
>LE_HBa0219L06_SP6_396487 (raw untrimmed)
NNNCCTTATTGCCGCTGGTACGGTTCCTGAGTCCCAGAGATTAACGGTCTAGTACTGCTTCCTTTATCCCACAGATGCTCCAAGTGCGCCACTGCTCGGA
TTTTTATCGCA
ACAAATGGAGTTATTTTCCCTTGCCACCCTCTTTTACATTATTTACTGCTCACAACATTGCGATCCGATGACCCCTCTGACGACGTGAC
CTCCAAATACTTCGGCCAATATTCCTCAGATTTGATTTGTAATGCCAACGGCTGTCACGCCGCTCCGTCCGTAACAGCTTCGACTCTCTGTCACAGCACA
GTGGTCACACGACGTGACTATTGTTGGCGATTTTTGACACTCTAATACCAAAGTATATAATTTTCCTTCTTCCCCTACCGATATGGCGTTCCGGAACATC
AGGATGGAAAAAGGAGTGGGGGCTGGCTTCTTCTGCGAGATCAAAACAGTGCATTTTCTGATAATTGCCATTTGACCGCCAACTTGCGTCTAAGTATCCT
ACTTTCTCAGCCTCACTGCGATAAAGACAAGATCACCACAATTGTATCTTCTGCAAACTTGAGGAAGGTACCGTTATCTAGACAGTGAGGCATCTAATGG
ATTTTGATTACTTCTGACTCAAACTTGATGATCGTTAAGATTTGTTATGGCTCATCTTCGCCGCAGAATGCCCGTGATGTTATGTTTTGGTGACATGGTG
ATTGTCTCTTCACTGCAGTGTTGTGGCATGTCTTTGTGCTCCCCGACTGTGGGGAAAACAATCCTAGGGCATATGCTCAGAGTTAAGCCCTCTTCATTTC
GACAACTAATGAGTAAATTGCTGGCCGATTGTTGAATACTCGGACCAACAAATAAGTAACTAATTGCTTTTTTGGGCAGAAACAAAACTTAACTTGTTTC
CTTAATTCTTTTTTAAAGGAAAAAGAGTCTTTTTGTCCCCCAACCAATTCAAAAAGGTTAAAATCCCCTCCCCTATAGGTTTGATCACACCCACCTGCCC
ACCCCTTTT
>LE_HBa0219L06_SP6_396487 (trimmed for quality and cloning vector)
ACAAATG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.499632
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0219L06
Clone
Clone name
hba-219l6
LE_HBa0219L06
P219L06
Clone type
BAC
Contamination
none
Estimated length
64,059
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found