Clone Read LE_HBa0237F15_SP6_396943

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0237F15_SP6_396943
Primer
SP6
ID from Seq. Facility
LE_HBa_237_F15-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 2369 raw
Sequence
>LE_HBa0237F15_SP6_396943 (raw untrimmed)
TCGCATCACTTAACATTGACCTCTGCTTCNACAACGCTTAGTCTGGCATCGCGGACTACATGTCGACATCAAANNTNAGGNGGCATNCTATTNTNACTNA
ACTAANNNTAGGNNTNATNNNANCTCCTCCTATTTACCACATTCTGCTAGATNANTGGAGGGNCGNNGNNNGANANGNNNANNGNNNCNGGNNAGAANNN
AGGNAANNNNANGNNAGGNATAANTTNGATTAGANGANAGGGAGAANGGATTNGGCNCTATTCGTCATTACTANTAGCTNCNACAGCATGTTTACCGCNA
ATTANATTTNNGNNNCATTCCTCAACAGCTNNGTCGGTTTCAACTGTGGTACATTGCTTGGACNTANCTNCAGGCATGAAGTCAGCATCNGCTAACTTAN
TCATNGTCACTTTAANCAAGATCATCGGATGTCAGCTAACTNCAGANCACNTATTCGAATACTGTGACGTAGATCGGCAACTCTCGTAATCATTTAGTCA
GTTAANCTNGATAGTCANACNCTTCCNTCNCTGCAGTACTAGTTGCCGCTTGTTGGGGACTATATCATNATNGCTAGCACAATATGCTACCTGCTATACT
TANCCGCTGATGCTTTCATACTCAGGNATATTCATAANCTCAGCTAACTAGTNAANTNCGGTCCATTAGTGCTAAGTATACCAGTAANCCACTATCAGGA
TCTTCATCATNGNNTNNCTAGATTCTTNATTTNCGGTACTGNCNTANCANCTNACTGCTAGCTATACATGCCTACATCTTGTTNCNTATAGTAGATAAAG
TATATAANCTNTACGATGTACGTATGCAAGTATGTACCGNTAATCTGTCGTTAAGCNCTACGACGTNTCTAGAAGTCACTAGTGAGTGATCTGNGTACNA
TGACTGCGGAGANCAAGTCTGTCATTCTGTAGTAATCTCTAGNATGCNGATCCTATGNAGAGATTATCTATACTAGATCATCTGACNTAGATACTNTCTA
NACTGTATAATGNGATGGTATAANGTACCATAAGTAGAGATGTCTATGAGCGGCTCTAACCCTGGNACCATATCACTACCAGCTACCATTACTTCTCATC
GTAANTATCTATCTACCTGATGTGTAANCTATAGTATATACTACGGTGACCTANGCTGTCTATCAGCAGTAATCTGCTGTGTTTCTATNCGTATGATGTN
TCTGNTATGCTATCATGATGTATACTCNAGGAATTCCTAACAANTGTGATATAGAGTNTNTANCTATATGCATATCATCTGTGATAGTATCATGCGTANC
AACAACTACTTCTAATACATTATCGTAACTCATATAATACTACNACATGTTATAGTGANTACTACATANTACTTCTTATTGTATNTGAAGACNGTAATCA
TTATATGTATATAGGATATAATGTAGTGTATGATCTATCATATCTATCATAATCGTGCTTATACGTCTTATCAGTCTTGCCANTACTGATCGCATGACTG
TGTTCGATTTACGCTGAATTAGTAGTANATATAACTGCTATATNCAGTCTTATGNATATATTATCTGTGCTATNATTAATATANATGTACTACTACTCGT
AATTATCANANTACCTATTATCGACTTCTACATACTTATTGGTATACTCGTATGAAGTAATAGAGCATCATCTCTGTATCTGTGAGTGTTNGTAGAAAGT
AGTANTCTAACTATATCATAGTAGTGTATGTGTCGTCATCATATGACTTGATCTAGTCTACTATGCTATGATGTAATNTATCTCTCATCTAGTATATCTC
TCTGACTCCACTATCTGGTGTCTACTANTCATAGCAGTTATCTATACGTACGTATGANCGTGTATCGATGTCTAGTNAGTTATGCTTTCATTCGACTATA
TATTTTATCTGCTCACTGCTAGATAGTTACTACATATTATTATGATGATCTACTTGTATACACCTTATATATATATATAGACTACTCNTANCATAAGTTC
NTTAATCGTGCTGCTACACNATCTATGCATANTATAGCACAAATAGTACTAAANATTATATGNCTCGTACATATACTATA
TATATGTATTGCTACGACTG
CTGTCTGATGTACATTAGCATTATATTGCTATGTATAGCTCTGTAGAAGTATATTAACTATACTAGATGATGATATGATTACTTGCTAGTTATGCATACA
GCTTGTATACCTTATAGTNTGCTATTATTNTAATTTAGTACATNCTNGATTCATACTGGATATCGATACTGACCATGATTACTATATATATATTGCTGAN
GATGCTGTGTTACTATATGTNATCACTCTACGTAGTANATAGTATANTATTATACGTAGTCTTTNATAG
>LE_HBa0237F15_SP6_396943 (trimmed for quality and cloning vector)
TA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for contaminants
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.20479
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0237F15
Clone
Clone name
hba-237f15
LE_HBa0237F15
P237F15
Clone type
BAC
Contamination
none
Estimated length
67,827
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found