Clone Read LE_HBa0237I16_SP6_397250

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0237I16_SP6_397250
Primer
SP6
ID from Seq. Facility
LE_HBa_237_I16-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1491 raw
Sequence
>LE_HBa0237I16_SP6_397250 (raw untrimmed)
TTAGGTCTATCTATGCACAATGATATTTTCGTGTTCCATCTAACACGCACAAAAAGAATACAGAGAGGGAACGAATCCCCATCCGTANATTAGGTATGNA
GGGAGNANANNGANAGNGNCAANGTAGGAANGCNAGGCNNAATGTAGACATACCCCTCTTACTAGTGCTTGTAGATCTCACAGTATGTACAATGTACAGT
AGTCTCAGTGTGCTGTCTGCTATACTACATAGTCTCTCATATGATTACTAAGTACTGTGGACGTAGTGATAACAACTATATTGTCTGATAANGACAGTCT
ACTAGCTTGTATTCGTGAGAGAGAGCATAGTCACTATATATACATACACTTGCCACTCATCTTCCATATCTTTATCATACGTATATGTTNGCGGTATTCT
GCGAGATGTATNCTCATAATGTCACCTACGTGTCGGTATGTCTGCGCTATATCTGTTACTGCGCTTGTATACGTATACATGCTACTAATACGTGACCACT
AATAGATGGTATCATCTCTCAATCGAATCGTTGACTTACTATAGAACACGTTGTGTAGTTTCAATTTCAATTCTCTCTGCTCATGACACTGATCATTTAG
TATCATTATCATATGTATACTTGATGTAGAGTATC
GTATATTTTNGTAGATGTAGTCTCGTATTTCAGTTCACTATATNGTGAATGCGTCACATTATTCT
CATTAGATCTAACTGTGCGTAATGTACTCTCCTTTCTAGATTGGCACCTCATAGGTAAATATATGTGAGAGCCATGTATTAGCTACATATCTCTAGAGTA
TCGTATTCTATTCTGCAGTTGTAATGTTGTACACCTGTATACATCTATTTATTATATTCGCTTCCTGTATCATGCGACTATTACTTTGTACTGTAGTTAT
CTCATATTCAGATGCTAATCTTGTCTTATATATCATTTATCAATAATATTGAGGTATGTATTAACATCTTCTTGATTTCCCATATATAATTATCATGTCA
TCGCTTTCTTATTTTATATTTATATAATCCAGTTTATTCTTATTGATATATGAATTAATGCAAACTATATAATTATTATATCCCATATTATTCATCTTGA
TATCTATACTAATGTATTCTCTTCTTACTCATCTATCTGGCTTCTCATTTACATACTAATAATTATGTAGTATATCCTTGATTATTATATTATACATATA
AGAAAATAATTTGTGATATTCTTGTGAATTCTTGATACACTAATATTTTTTAACAGTCTATATTCCTTCTCTTATCTCGTATATCTTTACATCTATGCAT
TCTATATCGACTAATCGGCTAATACTATATCTATGCTATTACTCTATGATAAGATATATTATCCTATATAATCAGTACATTTGTACTAATCATTTACTAC
ACTGTTATTCTTAGTATTCTATATATATTATTCACTATTTGATTCATTATATCTTAACTTGATACTCTCATATCATTGCATTATCCAATAG
>LE_HBa0237I16_SP6_397250 (trimmed for quality and cloning vector)
GTATA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.97318
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0237I16
Clone
Clone name
hba-237i16
LE_HBa0237I16
C02HBa0237I16
P237I16
Clone type
BAC
Contamination
none
Estimated length
93,092
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found