Clone Read LE_HBa0238C06_SP6_398225

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0238C06_SP6_398225
Primer
SP6
ID from Seq. Facility
LE_HBa_238_C06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
417 trimmed for vector and quality, 903 raw
Sequence
>LE_HBa0238C06_SP6_398225 (raw untrimmed)
NCGATATGAGATTTCCAGGGGGGGTGGTGTTTTGAGATACCAAGAAAGATGGTGTGTTCCGAACGCGATAGAGGGAGGGACCGGATCCNNGAGGAAGCCC
AGGGGCCCTTTAAGGGGCANNCANCCGGCTNCGACAAAAATTTACCATGACCTTAGGGAAGTATTTTGGTGGGAAGGGTTATTTAATGACATAGCGGAGT
TTGTTGCAAAGTGTTCAAATTTCCGACAAGTGAGAGACCAACATCAAAAGTTGGGTGGCTTACTACAAGAAATCAAAGTTCCTACTTGGAAGTGGGAAGA
CATCAATATGGATTTTGTAGTGGGTTTATCTCGGACTTAAAGGCAATATGGCTCTATATGGGTGGTTGTGGATAGGTTGACCATGTCCGCTCAGTTTATT
CCCATCATTTTTACTTATTCAGCGGAGGATTATGCTAGGATTTGGATAGATGAGATTGTGTGTTTTCACCACCCCTCCGTTATCCATCATATCGGATCGG
GGTGCACAAGTCACATCTAGTTTTTGGAGGTCATTCCAAGAAAAGTTGGGTACTAAGGTGAATTGAATTATCACTTTTCATCTCTAAATGGATGGATCAT
CGCAACATATTATTCTAACCCTTGAGGATATTGCATAGGGCTTGTATTATTGATTTTATGGGGAATTGTGATAATCATTTTACATTTGGTTGATGCTTGT
TTGTATTAGGTATAGTTGAATTTATCATTATTCCCATGCAATGAGTGATAATAGACTCTATATTGTCGAGTAGGTTGGGCGTCCTCCTTATCCTATTGTC
ATATTAAGTCAGGTTGATATTATACGGTTGCGTACGTATATAGCTACTTAATTCTTATTGACATAACTAGTCGTCCACATTTTTTCATGTACTTTATGAC
TTC
>LE_HBa0238C06_SP6_398225 (trimmed for quality and cloning vector)
GGGGGGTGGTGTTTTGAGATACCAAGAAAGATGGTGTGTTCCGAACGCGATAGAGGGAGGGACCGGATCCNNGAGGAAGCCCAGGGGCCCTTTAAGGGGC
ANNCANCCGGCTNCGACAAAAATTTACCATGACCTTAGGGAAGTATTTTGGTGGGAAGGGTTATTTAATGACATAGCGGAGTTTGTTGCAAAGTGTTCAA
ATTTCCGACAAGTGAGAGACCAACATCAAAAGTTGGGTGGCTTACTACAAGAAATCAAAGTTCCTACTTGGAAGTGGGAAGACATCAATATGGATTTTGT
AGTGGGTTTATCTCGGACTTAAAGGCAATATGGCTCTATATGGGTGGTTGTGGATAGGTTGACCATGTCCGCTCAGTTTATTCCCATCATTTTTACTTAT
TCAGCGGAGGATTATGC

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.984114
Expected error %
4.27278
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0238C06
Clone
Clone name
hba-238c6
LE_HBa0238C06
P238C06
Clone type
BAC
Contamination
none
Estimated length
129,019
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found