Clone Read LE_HBa0238G19_SP6_398667

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0238G19_SP6_398667
Primer
SP6
ID from Seq. Facility
LE_HBa_238_G19-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
56 trimmed for vector and quality, 878 raw
Sequence
>LE_HBa0238G19_SP6_398667 (raw untrimmed)
NCGATACCATCTGCTCACCGGCCGTGGGTATACGGATTATACTGAGGTTTCTGATGAGCATTCCCCCTCTTGGGACTAATTTTTCTCAAGGAATAGCCAA
TTCAACCCCTTAGACTATGTTAGGAGGCATCATGGGATCAGTACATACACCTTCTCTTTCAAATAATACATCTGGGAATATTTCCCGGGGGACATCTACG
TCACATTGCTTCCATATGGGACGCGGGACTTATGAATGCTCTTGATTTAAATAACGTAGTGACTGCCC
CATATTGATCATCTGGCACTTTGCCAGAATCC
CTGATCCTCAACTTGATTCTCATCAATATAGCATTTGCCAATATTTTAACTATAATGTTTAATGCATTTGAATTACCATTGGGAGAATGAAGGGTCTTGA
CTCATGCACATATGTTTACTCAAGCTATTCTTGCTAATTGTGGCATTCCCATGGAATCGAAAAATGTTGCTAATGCTTCTCCACGTTCATCTGGTCCTGT
TGCTCAATTACTCATGAAACTCAAAATGGCATAAGACAAATCTGCCACTCTTGAATTGGAAAACAATAATTTGTGTGTTGAACTTCATACTTCAAATGCT
GAGATTCATAGGTTAAAAGATCAATTGGTGCAACAACAGCTTGCTAACAATGCAATGGTTGATAAACTACTTGATAATGCTTGCTTCTAACTCTACCCAG
AACTAACAGATCTTCCACTTAAAAGAGCAACATTTTTGGCAACTAGGTTCTATTGAATCCCTAACTTTGTGGCTAAAATCTCTCCATTACTATGGCCAAA
ACAATTTTTTTGTACCTCAACTGGAATGAAACTAAAACGTCATACTGGCGTAATCTTACCAAAATTTTTCACTCACCG
>LE_HBa0238G19_SP6_398667 (trimmed for quality and cloning vector)
CATATTGATCATCTGGCACTTTGCCAGAATCCCTGATCCTCAACTTGATTCTCATC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for contaminants
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.791355
Expected error %
1.42351
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0238G19
Clone
Clone name
hba-238g19
LE_HBa0238G19
P238G19
Clone type
BAC
Contamination
none
Estimated length
100,306
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found