Clone Read LE_HBa0238M13_SP6_399228

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0238M13_SP6_399228
Primer
SP6
ID from Seq. Facility
LE_HBa_238_M13-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
11 trimmed for vector and quality, 818 raw
Sequence
>LE_HBa0238M13_SP6_399228 (raw untrimmed)
GTCATTTAGGGGGAANGANNNANNGNGGAAAGNGAGGAGGAGTCCTTAAAGGGGGNGNGAGAGGAGGGAAGGGGANAACAAAAGAACAGCAGGGGAGNAA
GNAACGAGGGGGNAGCATACAAAAAGAGGAANGNGGAAANGANGGAGAAAAGAACGGGGGCGGGGAGCGGAAGAAGCCAANGANGGGAAACGAGGGGAGC
ANGANGNAGGGGAGGAAAAAAGGAAGAGGGGAAGGAGGANAAGAAAGAAAGAGAAGNAAAGAAACANAGGGGGAGAAANGCAAAGAAGANGNGAAGAAGC
GGGAGGGGAAGGGGGAAAAGAGGGGAAGGANAAAGAGAAGGAGTTTTTATTGGAGGGTAAGAAAATCCAATTTTGGGGGGGGGGAAGAACTCCACATATC
TTTTCGCCTGGGAAAACAAATAT
CAAATTTGCCCTACATGGCATTGAATTTTACAAATGGGGAAAGTGAAGTCTATATAGGTCATATTTTACGAGAGAAT
GCTTCTATCTCTAATCCTGAATATTTCCTTCAGTCCGCCCACTTTCATTCCACTGGATCTGTGCATATCAACCTAGATCCCAGTGACTCTCAAACACTGA
GAGAACCCAGCTTATTTAGAGGCCTGTTCCGCAACCATTAGATCACTTGGGTGCTCCAACAATTGGTTCTGTACAACACCCCCCTAAAAGTACGGGGTGG
AAATTAACAACCGCTGAGAACCCTTGGGTTTTGAAAAATCCCAAACTTAAAACAACAGGTCCCCAGCGGAAAGTCAGTAGCTGGTTTAACACCCCCGTAC
GGGGCAGAGTCGGAATGA
>LE_HBa0238M13_SP6_399228 (trimmed for quality and cloning vector)
CAAATTTGCCC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.779533
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0238M13
Clone
Clone name
hba-238m13
LE_HBa0238M13
P238M13
Clone type
BAC
Contamination
none
Estimated length
81,222
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found