Clone Read LE_HBa0223D15_SP6_400288

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0223D15_SP6_400288
Primer
SP6
ID from Seq. Facility
LE_HBa_223_D15-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1592 raw
Sequence
>LE_HBa0223D15_SP6_400288 (raw untrimmed)
GAAAGAGAAGGAAGAAGTGAAGAAGAGAGAAGTGGAAGAGAAAAAAGATGAAGGAGAATAAGGGAGAAAAGAATGAAAGNTCCTAATAAAAAGAGAGGGA
NGNANANNNGAAGAAANAAAAAAAAAGAAAAAGAAGGGAGAGGGAGGAACGCCCTATAAAAGAGGAGAGAGGNGAGGAGAAAGGAGGAGAGAAAGAGAGA
AGATAGGAAGGGAGGAGAGAGTGAAGAGAGAAGAAGAGAGGGAAGAAGGAAGAGGAGAGAAGGGAAAGGTATAGTGCCAGAGAAGAAGGGAGGGGAGANA
ATGAGGAAGGGAAAAGAGGAGAGAGGAAGAAGAGAGGGAGGAAGGGAAGAAAGATATGAGAGA
GAAAAAGGGAGGAGAGGGAGAAGAAAAAGAGAAGAAG
GAGGAGGAGGAAGGAGGGAAAGAAGAAGGGAAGAAGAGAAGGGGGAGAGAGAAAGAAAGGAAGAAGAAAGAGAAGAGATAGAAGGATGAAAGAGAGGGAA
GAGAGTAGAGAAGAGAAGATAGGAGAGGAGGGAGGAGATAGAAAAAGAGAAAGAGGAGAAAGAAGAAGAAGAAGGTGATAGAGAGAGTAGAAAGAGAAGA
GAAAAGGGTGAGGAGAAGCAGAAGAAAAGGGGAGAAGAAGAGAATAAGGAAAAATATATATAGAGGAGGAGGGAAGAATGAGAGGAGGGAGAGGGATACG
GAAGGGATAAGGAGAGAAGGGAAGAGAAGAATGAAGGGAGAAAAGAGAAGGAGGTGACAGAGAGAGGAAAAAAAAAAATGGAAGAAGAGGGAGAGGGAAG
GAAAAAGAGAGGGAAAAGAAAGGAGCAAGAGAGGGAAGGGTAAGAGAGAAGAGGAGAGGAGGAGAGAGAGAAAAAAAGAGAAGAAGAGAAAGGATGAAAG
AAGGAAAAGGTGAAGAGGAGAATGGAGGAAAAAAGAGTGGGAGAGAGGGAAGAAGGAAAAAAAGAAAGGAAGGAAATAAAGAAGGAAGAGAAAAAGGAAA
GAGGGAAAGAGAGAGGGAGAGAGGAGGAAAAAGGAGGGGAAAAAAGGAGAAAAAGGTGAGAGATAGAAGAAGAAGAGGGAAAGAGAGGGAGAATGAGGGA
GGGAAAGAGGGGAGAAGAAGGAAAGAGGGACAAGGAGGCAGAGGAGGGTAAGAGAGAGGATAAGGAAGAAAGAAGGAGAGAAGAAGAGAAAAAGAAGGGT
GGAGAGAGGAGGAGGGATAAGAAGGAGAAAGAAAGAGGAGAAAGTGAGAGAGAGAGAGAGATGAAGGAAAGGAAGAAGGTATGAGAGAAAACAAGAGGAG
AAAAGGAGAAAGAGGGAGAGAGGAAGAGGAAGGAGAAAAGAGAGAAAGAAGAGAGNATGGGAAGGTGGGGAAAAAGAAGGAGAGAGAGAATAGAGGAGTG
AGAAAGAAAAAAGGGGGAGGAAGAAGAATAAAGGGTTAAAAAAAAAGAAGGTAGAAGAAGAAAGGGAGAGAGAGAGGAGATAGAAGGAGAGGAAGAGAGA
AAAAGAAGAGAGAGGAGAGAAGGAGGGTAGAAAGAGGAGAAAGGGAGAGGACAGAAAGAGGAGAAAGAGGGGAGGAGTGAGAAGGAGAAAAN
>LE_HBa0223D15_SP6_400288 (trimmed for quality and cloning vector)
GAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for contaminants
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.682791
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0223D15
Clone
Clone name
hba-223d15
LE_HBa0223D15
P223D15
Clone type
BAC
Contamination
none
Estimated length
139,910
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found