Clone Read LE_HBa0241A05_SP6_401841

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0241A05_SP6_401841
Primer
SP6
ID from Seq. Facility
LE_HBa_241_A05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1032 raw
Sequence
>LE_HBa0241A05_SP6_401841 (raw untrimmed)
TATAGCATGTTACAAGTGATTTGCGGAGCCTTATGAGAGAACAAGTTATCCTCCTTTTGATGGAGATCCAAATGCATATGTTTGCACCAGAGAGAGTGCT
TCTTATTAGCACAAAGGACCCATTTCATTGACCAATACTCAGTTTGTGATTCACGAATGTCCTCAGCTTAATAAATGAGCCATGAAATGTTTTCATTGAG
AGAAAACAATGAACCATTGGTGTACAAAAGGAGGATGTCTGAGAAAAGTATTCCATATAAAGGGACTTATCGGGATAAGATGGAGCATTACGCCGAAAAG
AATGTGCGGACTCCGAGTAATATGAATCTAGGCAGAAACAAACGTTCCATCCAGGAATCAAACTGAGAATGGTGGAGTCTTAGAGGCAGGCACGTCGTCT
GGTAGATGATCAATCACTACTATTCAGCGCAGCGTGTAAGAGCACTCCCATGTAGCGAATGATGATGTCTTCGTACAAGACAAGCATACATCTGACATAG
ACTTACCCGGTAGATAATGCATAGTCAAAGACCCCATGAAGAGCGTATGAAAAGAGTACATAAGGAGATATAAGTGCTCGTTTCTGTAAGTACGCAAAGC
CTTCTCCAAGCTGGAGCGGAAACATCCTTTCAAACGACTCCAACGACGAAAATGTTATATACCTCGTAGTCATGCACCGTGCAGTATCCAGGAAATTAAT
AAACCTTACCAAAAAGTTCAAAGACATAATCAGGACCCGCTAAGGAATGAAACTAAGAAGTGAGTTATTCGGCAGTTAAAACAATCAAATAGAATAACTC
CATCACAAGTGTAGGTAGTGAGAAACGTCTATATTTATGATGCCATTGGCACTCAACATACATAATGTATGCCTATGAATAAGAGACGAACTGTACAAAG
AACACTGCACCGGGGGGCTAATCGAATCAATTCGCGAAGCAAATTCTGAGCATAAACAATAAAACATAAGTTCATTCTCCCACAAATACTAAGTACAAAC
GACTACCGAGAATTGAACATACACATTTAGAT
>LE_HBa0241A05_SP6_401841 (trimmed for quality and cloning vector)
AATGC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.51231
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0241A05
Clone
Clone name
hba-241a5
LE_HBa0241A05
P241A05
Clone type
BAC
Contamination
none
Estimated length
82,159
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found