Clone Read LE_HBa0241A05_T7_401843

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0241A05_T7_401843
Primer
T7
ID from Seq. Facility
LE_HBa_241_A05-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
12 trimmed for vector and quality, 838 raw
Sequence
>LE_HBa0241A05_T7_401843 (raw untrimmed)
CGGGGACTCTAGAGTCTACTGCAGGCATGCAAGCTCTTAAATGCCCAGAGTTGTTCTTTAAACATACCTTCTTTTAAATGTGGGTAACAAATCGAGTTAT
AAAAGGTCCAATGAATTCTTATTTTGTCCAGTAGTACCACCCACAACAAATATATATTACCATTTACCCCTTAAGAGGACCCTCACCAAGGAAGATGAAA
TTCTTATAGGGTGAAGAATGGGATCTATACAAGATCTTGATTAACGATTACACCTCTCCATTCCTATTGACAAAAATTGAGTTTGCCAAGCCACCAATTT
TATCAATAATTTTTTCCCTCACTACAAAAAATAAATACTTTTTCTTACTTTATGACACCCCTATAACTAGATGTGCTAACCCATGCCTTATGTACATAGA
ATGCCCAAGGCTAAAACCGGTGTACTCATCTTGAAGATCATATCTCAACATCTCTGAACACTTGATACCGCTCCTCCAACTAACATGTAGATTTATATGA
ACGTGATCTGAATGCGTTCAACATTCAAAGGCCCTCGACTTCGAAACTTTACACGAATGAGTCCTTACATGACCTAATAAGGCAAAATCTTACGTATGGA
GTATCTCGGGGTATGATGGTCTTTATGCGAGCGAAGCGTGTGACCGTTAATGAGATATATATATAACTAGGTTTGTAGGTCATGAGGTGGAGGTCCATTT
TTGGGACAGATGGCCGAAAAATACATCTCATAGAGAAGTCTTGCTCCACCCGAGTTCAAACTTAGGGGGAAACGATGACAAAATTGCTCTTCGTTATTTA
AGTCGGAAAGACAAAGGAATTGTTAATACTCAATCATA
>LE_HBa0241A05_T7_401843 (trimmed for quality and cloning vector)
TGCAGGCATGCA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.26753
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0241A05
Clone
Clone name
hba-241a5
LE_HBa0241A05
P241A05
Clone type
BAC
Contamination
none
Estimated length
82,159
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found