Clone Read LE_HBa0118A08_T7_40335

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0118A08_T7_40335
Primer
T7
ID from Seq. Facility
LE_HBa_118_A08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
810 trimmed for vector and quality, 903 raw
Genbank Accession
DU059628
Sequence
>LE_HBa0118A08_T7_40335 (raw untrimmed)
GTGTAGCTGGGTCCCGGGGGCTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTATATCATCATTTCCGCGCCTGCCTTCTATTTTGAGGAGTAGTTCA
TCTTTGAGTGCTTGTGACCTGGACGACGTTGGGGATGAGGAGAACATGTTGGCTTGGGCAGCAATTGATAGACTGCCAACGTATGACAGGTTGAGATCAT
CTGTATTTGAGGAAGTCAATGGTAATGAGGCCAATGTTAAGACGAATAGACTAACTGATGTTACCAATCTTGGAGCTGTACAAAGGCATGTTTTCCTTGA
AAAGATGATTAAACACTTTGAACATGACAACCTTCAATTGTTGCACTAAATCACAAAGAGAATTGACAAGTAAGATTTCTGTTAGTTACTTGCCACTATA
AGTTAAATTATTGACTCTACTGGAAGGTCATTGCTCTAGCATTTAAAGTTGCTATCTTTTTATTGGTGATTGACAATGCTAAGTTATGATCATCATTATC
CGCATATCTAACGTCTTCTTTCTCATTTTATCAAAGTTTTATCTGTTAGACTTAATTCAATGACCTGAGGCTACGGTTGACTCTTGTAGAGTTGGTGTAA
AATTGCCTACTGTGGAAGTGAGATACAAAAATTTAACCATTGAAGCAGAATGTGAGCTAGTTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCAA
AAGCACAATAATGGTAATTTTTTGCTATTTGATTACAGTTCGTTTTTATTGTCATCAATCTGATCTCTTACATATGTGATAGTTCAAAATCAAAGTTGCA
GGCGCTGGGTTTAAAAATTGATCATCAGGAGGCATTTTTTAGGACTTTCATGTACAGAAGGTGTTATTAATTGACCCCTTGAACTGGAAATGCTTGATTT
TTC
>LE_HBa0118A08_T7_40335 (trimmed for quality and cloning vector)
AGCTTTATATCATCATTTCCGCGCCTGCCTTCTATTTTGAGGAGTAGTTCATCTTTGAGTGCTTGTGACCTGGACGACGTTGGGGATGAGGAGAACATGT
TGGCTTGGGCAGCAATTGATAGACTGCCAACGTATGACAGGTTGAGATCATCTGTATTTGAGGAAGTCAATGGTAATGAGGCCAATGTTAAGACGAATAG
ACTAACTGATGTTACCAATCTTGGAGCTGTACAAAGGCATGTTTTCCTTGAAAAGATGATTAAACACTTTGAACATGACAACCTTCAATTGTTGCACTAA
ATCACAAAGAGAATTGACAAGTAAGATTTCTGTTAGTTACTTGCCACTATAAGTTAAATTATTGACTCTACTGGAAGGTCATTGCTCTAGCATTTAAAGT
TGCTATCTTTTTATTGGTGATTGACAATGCTAAGTTATGATCATCATTATCCGCATATCTAACGTCTTCTTTCTCATTTTATCAAAGTTTTATCTGTTAG
ACTTAATTCAATGACCTGAGGCTACGGTTGACTCTTGTAGAGTTGGTGTAAAATTGCCTACTGTGGAAGTGAGATACAAAAATTTAACCATTGAAGCAGA
ATGTGAGCTAGTTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCAAAAGCACAATAATGGTAATTTTTTGCTATTTGATTACAGTTCGTTTTTAT
TGTCATCAATCTGATCTCTTACATATGTGATAGTTCAAAATCAAAGTTGCAGGCGCTGGGTTTAAAAATTGATCATCAGGAGGCATTTTTTAGGACTTTC
ATGTACAGAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.961437
Expected error %
1.83261
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g37280.1 Score 80 E Value 1e-15 Identity 16.50% Align. Length 248bp (30.62%) Frame 2
68415.m04573 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g53480.1 Score 79 E Value 2e-15 Identity 17.30% Align. Length 236bp (29.14%) Frame 2
68416.m05904 ABC transporter family protein PDR5-like ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAH39853.1| Score 140 E Value 3e-32 Identity 77.00% Align. Length 603bp (74.44%) Frame 2
PDR-like ABC transporter [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
tpg|DAA00873.1| Score 80 E Value 5e-14 Identity 16.50% Align. Length 248bp (30.62%) Frame 2
TPA: PDR5 ABC transporter [Arabidopsis thaliana] gb|AAC98048.1| putative ABC transporter [Arabidopsis thaliana] ref|NP_181265.1| ABC transporter family protein [Arabidopsis thaliana] pir||G84790 probable ABC transporter [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0118A08
Clone
Clone name
hba-118a8
LE_HBa0118A08
P118A08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found