Clone Read LE_HBa0230E07_T7_404947

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0230E07_T7_404947
Primer
T7
ID from Seq. Facility
LE_HBa_230_E07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 2342 raw
Sequence
>LE_HBa0230E07_T7_404947 (raw untrimmed)
CGTAAACTCTGTGCCCGTTGAACTTTATGGNACTTCAACACATTATATCCTATACCATTATTCTTAATGAGTAATATACTCTTACTAACACCGAGCGGCT
AATAAGGTTATATACTGTTCTCAACTGCTTGTAGCAATCATTCACCACATTCTTTTTNTACTAAAAGGGTTAGATATATAGCTTCTCCCTCTACCCCACC
CAACATGCCCATATTAACTTATTGTTGGNAGTATTTGTCGATTTTTATTGTGGATCAACATCGCTATGTGGGACATCCACCTCACTTCCATTAACTCTGA
TGCTATATATCAGTTATAATCTTATTAACCTGTATAATGAAGCACACTACACCACTGTCTTTTATTATTACCACTCTATTGCGATTACGAAGGATACTCT
CTTTTTATCTATAGATAGACCATATCCATTATACTTATTACCATCTACGCTCATGGGCATGCAGAATACAAATCGATATCAACTATATGCTCCTCCTCTT
CACACAATAAGAGTACGTTGTCTTTGCGTGAACAATAACTTATCCTTCTGCTGGCGCTGACGCATATATACCCCATAATACAACTGATAGCTAACGTTTC
CACATATTATATGTCATCTATATATCTGTCGTGCATAACAATACATAACTCATAATTGGCATTTGTGGTGGTATTGTGCAGACCACAATTTTAATAACTN
CAGTTTATATACGCGAGCTTCCAAACTAACAATAAGTCTACACTGTTACTTGAATGATGACGATGCTGGCATGAGTATTTAGAGTGTGCACGTTGTATCG
TCATTTCTTACTATCTTAACATTCTTACCTGGACTAGTACATGATCTATTGTATGTTCTTATACGACAGTGAATGGTGAAGTAGAGAGAGAAATCAGATG
GAACGCTCTTGATACTATTGTGTCGAATGTATGGATGGAGGCGTGGTAAGATCTGCCATACACATACATCACGACAATGCGATGCACATATATTAATATG
TGAGACATCTGCCACTTCTCTATAGTATACTATCTCTCTCATCATCAATTATGACGTGTTGTATAGTTATGAGCATATCAAGTAACATGATATCATGCAT
TGTCATATTAGTATGGTATTATGTACTATTCATCTCCTACACTACTAACCTATCTCATCACACGTGTAATATCATTAATACTACAGCACACTCTGCTTAT
GAGACATCACATTTGCCACATGCTCGATATCACTTATATATGACGATACTGGTCTCTGAAACTTACTGATNGCGATGATCTATTATGTCCTAGTATATAT
GATTATATCCCATGACTCTGTCTCCTACTTACAGCTCACTGCTGTACTGCAGATGTTGTAACATAGCTATAATTACTGACTTACAGTATACTTCTGCTTT
CGTATGAATTACTACTCCTATCTTCTTAGTTACCGTGCTGACTACCTGCGTACATGCAATAGATTCGATTATCATACATCATCGTATTTGATCATATNCT
ATATGCTCTCTCACTATATATGCTGATGTCACGTCATCATAGTAGATGTGTCACANATCATTTAGATTGGACGTCTATTGAGTCTCGTATCGTATGAACT
CGTCTGTCAGTGCATAGCTANTACACANACTATGATATCACTGTACCATAGCGCTGATCTATCATCTTTATGTACTAGACTGTCACTGTGTACTGCTACT
ACTATAGACTTATCTCTATCGCTCCTCTACACAGTANTGTAGTGTTATTNCTGCATAGACACTACACTATGACATGCTCGAAGACGTACATGTTCATTAA
TACATCGATGACGCTAGCATATTATGCTATGCTCGTGAGCTGTTTCATCAGTACAGTACCACGACTTACTCTTTGATGATTCAGATCTGATCATACTGTG
TACGTANATNCATTTAAATATAGTCTACCGTATACCATCTGCAGATCTTGTACGTAGTTAGAGTAGGTATGTAGTTTACATGCTGTCTCTGTGACTGCTT
ATACTACTGTCAATATCTTTTATTACTCCATATTTCCCACACATACTATCGGTCTCTTACGTGCTGCATGCACACATTATTACACTGTCTGTATATGTGA
TATATACACGTCGCTCTTGCATGGTACGTGTGTAGCTCGCCTGTACGACTTACCTATAAAGCTATCTATATAAATGCATCTGACTTATCCACGTCCTGTA
TCACGATTCTCTCATGGATCCATTCTGCATAAGTATATACATATTCATATGATAACTCTAAGTGTATATCAACTTAACCCTATACCACGATCTAAGTAGC
TCTCGAGACGCTCATAATCGATTACTATGTATTATACATACG
>LE_HBa0230E07_T7_404947 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0230E07
Clone
Clone name
hba-230e7
LE_HBa0230E07
C00HBa0230E07
P230E07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found