Clone Read LE_HBa0246E15_SP6_405340

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0246E15_SP6_405340
Primer
SP6
ID from Seq. Facility
LE_HBa_246_E15-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1306 raw
Sequence
>LE_HBa0246E15_SP6_405340 (raw untrimmed)
GATTTGCTTGCCCCCTTATCTTGCTGTTCTCGCGTGCTATCTTACCACTCCCCTCCCCTACATTTGAATCCGCCCCCTCTTTTTAGTGGCGTAGTGCCAT
AATTGTGAGAAAAGAGCGATGTTGCGCGACCCCTTTTTTAGCAGGGATACTTATTGGTTAGCGCTCACCAATATTGAGGTAGAAATTGTGCACTCTACTA
TTCAAAGTTTACAGGAGTGACATTGTCAAATTACCTGACTAAAACGATCTTCGCTCGTTTAAGTATTTAATAACAAAAATTCTTGAATGACTTATGGATT
CACCTTAGGAGGTAGACCAAACCCTTATGGCTAATTGGAAGGAAAATACACCTAAGCTATTTGGCTTTAAGGTTAACAGTCTATCTATGGTCCGCGGACA
AGAACACTATATAGTAATTTGATCAAATTTCGCGGGACCGTTCCTTAGGAGGCGAAACGCTTATTGATAGCTAGGAATCTCAATGGCTCTATCCGAGTCA
TGGTTATTCCCACTTTTTGAAAATTTGGTTTATTTTCCGCTATCAAGCCAAAATGCGTTGTTTACAAATATTGGG
GTTTCCAGGCGAGAAACCAATTTTT
AAGTCCTTTACGTAAAAGCCCCGAAGTTCTCATTGAACGGTACTTACTTGTTGTAAGAAAATTTGATAACCCTCTGAGGCTTCGATGGACCTTTAATTTT
TCCCTGAATTAAACTGGATTCGACTCCTCGGCTCTTTAAACCTATTTGGTTAATGTTACAGGATAATACCCCTTTAATATCGAATGATATATTGTGCCGA
TCATACTTCTTCCCGTTTATAAATAGTAACGACGCATGGGCGAAAAAAAAAATACTCTCCTCCATCTGAACCGTTATTTGTCTGGTATTTTATTTCTAAA
CTTGGGGCGGATTTCTTGGTGAAATCATAAAATAAAACTCCACCTATGTGTTTCTTGATCATGGGTCATCTCACCCCCAATCTACTATCTTTTATCCTTT
CTGGATGCTTTCTAGACCACGACTACTTATTATCTCTCTGGTTTTTTCTCATGAAATCAATTAAAAATATCTCCTCTCTTTGTCTTTTTTATATACTTTT
ATGTATTGCTGTTATCTTATATTAAAAGTCACTATCCGTGCCTTTCTGTTATGTATACTACTAGCTTCTTATAAATCTCTAATATTATTTGTACTTCCTC
TTCCTGCTCTTATATTTATCTTTTGGCTCTCTCAGATTCTCTTGCCAATTATTCGCTCTCTGCTCTCATCAAATCACTAGCTTTCCTATACTAATATCTT
CTTCTA
>LE_HBa0246E15_SP6_405340 (trimmed for quality and cloning vector)
GT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.33519
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0246E15
Clone
Clone name
hba-246e15
LE_HBa0246E15
C06HBa0246E15
P246E15
Clone type
BAC
Contamination
none
Estimated length
74,091
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found