Clone Read LE_HBa0231A14_SP6_406898

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0231A14_SP6_406898
Primer
SP6
ID from Seq. Facility
LE_HBa_231_A14-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
143 trimmed for vector and quality, 843 raw
Sequence
>LE_HBa0231A14_SP6_406898 (raw untrimmed)
NNCCAGTAGAGAATTCCTTAGTTGCATTTTAGAGAATAAGCGTTTAGCCTCCGATTTTGACCTGGTTACCATCTGTGTGCAGCGCTTCGTTTGATCTTCG
CGTTCACAATGGAATCGAATGGGAGGGTCCCTATAGACTAC
AATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCGACTGAATTCTTCACTGAGGTAGCA
AACATTCAAGTTCTAGTCTTTTAACTAACAAACTGAGGTGCTCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTGCCGAAAGCTTGGTTCT
TGACATGAGCTGCACGCGCGATGAATTACATCACAGATTTTGATATGGACTTAATTCGTTGGAGTTCCACGTCGTTTGTGGGATGGTAAATAGGTCTCTT
AATTTCTTTACCATCTATCCATGCTACTCTTGTGCTCGAGGAAAAAAAATGTACAAAGTCCGTCTAACTGGTTCCAAAGGGATACCTTGTTACCGGCCTG
TACCAGGGTTTGAAACCTAACAAGGAAGGAAGGCGCCCCGCGGTTTTAAATCAAGGGGGGAGTTCTCTCCACCAGCCCAATTGGTTAAACCCCCGGTTCC
TTTGAAAGGGGAATGCCTTTTTTTTGTTGGCCGGGCTTTCCCCCGGGTTTTACCTCCAGAGGGGCCTTAAAAAGGGAAATTCTCGCATCAGNNNTTTTTT
TCCCCAAAAAAGTGCGATGTGAGGGNNNNNNNNNNNNNNAGGGAGGAAAAAAAAAACCCCCCCCCCAAAAAAAANNNNNCGGGAAACCCCCCCCCCCCGA
AAAAAAGGGGGCCCCCCCCCCCCGGGGGGGGGGAGACCCCCCC
>LE_HBa0231A14_SP6_406898 (trimmed for quality and cloning vector)
AATTTCAAGTCCCCAAGGCTTGGAGAAATAAACCGACTGAATTCTTCACTGAGGTAGCAAACATTCAAGTTCTAGTCTTTTAACTAACAAACTGAGGTGC
TCGTATTATGAACGATTTTGACCTCTTTATATGACACTAATTG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.944149
Expected error %
2.07609
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0231A14
Clone
Clone name
hba-231a14
LE_HBa0231A14
P231A14
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found