Clone Read LE_HBa0247G02_T7_407004

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0247G02_T7_407004
Primer
T7
ID from Seq. Facility
LE_HBa_247_G02-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
18 trimmed for vector and quality, 889 raw
Sequence
>LE_HBa0247G02_T7_407004 (raw untrimmed)
NCCCCTTTAAGGGCTAGTTGGAGACAAGTTACTGTTNTANAACCCTGTAAGTATCTTTAAANANNATGNANTAAATGTCTTCCTTTTCCCCGTTCCAGGA
GGACCCCAGATTAGCTTCCCCAAAGGGCTCGTGATGGNAATAATTTGTCGCAAGAAAGTTCATAACTGCTTCTTGTTGAGAATCATTAAGATTGATTAAC
CAATTATACGCAAGGATCTTTGATCTGCAAACTCGATACACTTCCCCTTGCAAACAGACATTACACTTCTTCTTTCCCTACCAAAGCAATAGAAGAAGTC
CAATATTTCTTATTATGATATACAACTAACAACTGGAAGAACTTATTTTTTTTTTGTCCCCCCAAAATCACACGAAAATTTTTTTTTGGAATATTAAAAA
GGTTCCTTTTTTTTTAAACCCCTTTATCCGAATAACCAATTAGAAAAAATTTTTTTGTTTCTGTTCCCTCCAAAATTTGTTTCCCGATTTTTTTTTAAAA
ATTTGAGATTTTTTCCTTTTCCCCCCCCAATTTTAATAAATTCCAAATGGCGGGTATTTTTTTCCTTTTTTTTAAAAAAAACCAAAAAAAAAAAAACCCC
CCTTATAATTTTCCTATAGCCTTTTTTCCCCCAAAGGGTTTTTTATAAAAAAAAACCGATTTTTTAATAAATTTTTTCTTTTCCCCATCGTTAACAAAAA
CCTTTTTTATAGAATTTTGGGTTTTTTTATAAATTCACACACTTTGGTTTTTATTCTTTAAGGGAATAAAACCCCCTTTTTTTTTTTTTTTTTTTTAAAA
CAAAAATTTCTTTCTTTCCATCTAATTTTGTAAAATTTTATAAATAGATTTTATTACTCGTTCTTATAGATAATATTTTTTTTTTTTTT
>LE_HBa0247G02_T7_407004 (trimmed for quality and cloning vector)
TTGGAGACAAGTTACTGT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for contaminants
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.700601
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0247G02
Clone
Clone name
hba-247g2
LE_HBa0247G02
C02HBa0247G02
P247G02
Clone type
BAC
Contamination
none
Estimated length
57,868
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found