Clone Read LE_HBa0119P02_SP6_41810

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0119P02_SP6_41810
Primer
SP6
ID from Seq. Facility
LE_HBa_119_P02-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
8 trimmed for vector and quality, 714 raw
Sequence
>LE_HBa0119P02_SP6_41810 (raw untrimmed)
AGTTTACTTACCCTTATTTAATTGAATTTGTTATTTACGTTGTCCTGTATAGAAAGCATGTGTAGCACCTTCTTTAACCATTGCTGGATTTTTTATTCAT
GAATCACAAGACAGTTTCTCATCTCCAGGTATGGTCTCCATTCTT
CTCGGCTCAGATGATAGTTCCTCAAAATAAGTTACTATCTCAATCTTTATCTCCT
CCATTCTCTTGTGTGCATCATAGGACTGTTTAAGCGAATTATATGGACAACTTTGTGGGACCATGGATGAGTTAACCCTAATATACCATGAATATTCATG
GATATGAATATTAATGCATATATACACCTTATGAAGATACTTTTGATCTTATTCTGTTTTATTTCAGCTTTTATTATCCCTGTATATCTATTTTACCTTT
CTTGTAGGACTACCAATACTATGAATAATTGAAAGAATTGGAATGAGTTTCCTTATCTTTGCTTCGGACCTTGTATGTCGTGGAATGAAATACATCCTGC
AGGACACTGTTATTCATCGACTGTGGAATTTTAACCACTGATATATAGCTACTCTATTTAATCTGAATAACCGTCATTGTTAAACCATGACTTATATTCT
TCTTTCTAGAGTCTCTAAGTGTGGCCCGGCGGCTTATCCGTTATTCTATTCATACTATAATGGAATTAAAATCATCTATACTATTATTATTTTTCTTCTT
GTTATATTTTTTTT
>LE_HBa0119P02_SP6_41810 (trimmed for quality and cloning vector)
CTCGGCTC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.485224
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0119P02
Clone
Clone name
hba-119p2
LE_HBa0119P02
P119P02
Clone type
BAC
Contamination
none
Estimated length
102,873
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found