Clone Read LE_HBa0041C18_SP6_42754

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041C18_SP6_42754
Primer
SP6
ID from Seq. Facility
LE_HBa_041_C18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 1178 raw
Sequence
>LE_HBa0041C18_SP6_42754 (raw untrimmed)
TACAGACATGGCGTGCATATGTGGGACATACCCAGCGTTAGCACCGCAGCTAACCCCGCTCCACTACCATAGTTTTTCTCCCCTAACAATGTTGCTCACA
TTGCCCACTAAAGGTCTAAGGGGCGACTACTCGATAGATTTAGTAGGNCCCNCCCCNNNNNCCCCCCCCNNCCCCCCCCCCCCCCCCCCNCNNCCCCCCT
CCTCCCCCCCCTCCCTCCCTCTCTCCTTTCTCTTCTCCTTTCTTCTCTNTTTCCCTTCTTCTCTCCCTCCTCCTTCTCTTCCTCCTCTTCTCTCTCTCTT
TTTTCTTCTCCTTCTCTCTCTCCTTTTCCCTTTTTCCCCTTTCCCTNTTTCTTCTCCTTTCCTTTTCTTCTTCTCTTCTCTTCTTCCTNTCTTTTTTTCT
TTTCCTTTCNTCCTCTCCTCTCTTCCTCTCTCTTTCTCCNCTTTTCTTTTTCCCTTCCCTAAGGTTTTCTTCTCTCTCTCTTCTTCCCTCTCTTTTTNCC
TTCTTCTTTCTCCTCCTCCTTTCCCC
TTCCCCTTCTCTCCTTTCTTCTCTCTTCTTCTCCTTTTTCTTCTCTCTCTTCCCCTTCTCTCNTCTTCTTCTTT
CCCTTCTTCCTTCNCTCTTCCTTCTCTTTTCTTTTTCTTTCTTCTTCCCTCTCCCNTTTTTCCCCTCTTCNCTTTTCTCTCTTTCTCCTTCCCCTCTCTC
TTCTNCTTCTTCTTTTTTCCTCCTCTCTCTTCCTTCCTTTTTTTTCNCTCCTCCTCTCTTCTTCTCTTCTCTTTCTCTTCNTTCCCCTTTCCTTTTCTTC
TCTCTTTCCCTCTTCTTCCTCCCTTTCTCCCTTTTTCTCCTCCCTCCTCTCCTTCTTCTTCCCCCTTTCTTTCCCTTTCCCTCTCCCCTCCTCTTTCCCT
TTCTCCCCTCTTCCCCTCTNTTNTTNTTCTCTCTTCTCCTCCNCTCTCCTTTCCTCTTTCTTTTTTTCCTTCTCCCTTCTCTTTCCCCTTTCTTNTCTTT
TCTCTTNCTCCCTCTTTTCTCTTTCCTCCTTTCTCTTTCTCTTTNNCTTCCTTCTCTCTCTTTCTTTCTTCCCCTCTCTCTTTTCNTCTTCCTCCCTTCT
CTCTTTCTTCTTCCTTCTTTCTTCTTTCTTCTTCCCTTTTNCTTCTTCCTTTTCTCTTCTTTCTCTCTCTCTTCCCTT
>LE_HBa0041C18_SP6_42754 (trimmed for quality and cloning vector)
TTCCCC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.52038
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041C18
Clone
Clone name
hba-41c18
LE_HBa0041C18
P041C18
Clone type
BAC
Contamination
none
Estimated length
107,981
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found