Clone Read LE_HBa0053B14_SP6_43466

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0053B14_SP6_43466
Primer
SP6
ID from Seq. Facility
LE_HBa_053_B14-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
44 trimmed for vector and quality, 786 raw
Sequence
>LE_HBa0053B14_SP6_43466 (raw untrimmed)
AAGGAAAAATAACTATCCTAAGAGGGTGCTTTTTCTTGAGGCGCTCAAAAGCCAAAACTTATATGAATAATAGATATTTTAGGGGTTTATTCCCGACTAC
AAGTCGCGTTGCCCTGCTACTAAGGATCCCGTCCAGCCACAACG
ACCCCACCCTAGTGGCTTGCATGGAGACAGAACCTCTGAATTTGAGTTCGAAACCC
TCATTTCACAACACACCTTCAACCTATGATTCTTAGAAAATATATGTTTCATAATAAGATCAATTTCGGGCTCGCTCGAATTTGATACTGTAAAATCATA
CGATTTTCTTAACGTCTTACCTATCTATGCATATTGTCGAAATTCATAATTAGACTTCATATCTATTACCAGATCTTTCAACACCATACTGACTCTGACT
TCTTTCAAATCTCATAACAGTAACAACTTCCATATTACCACCAAAGACTTTTCGATATGATATTTTTCGCTTGTGACGTTACTGTATATGCTGATTTAAA
TTGGTGTATAAAGATATAACTAAAAATTATTCTTTCATTAACATTTACTTTATTCTTATAACCATAATGACTCAATTACACTCNACATAATATTTATATT
GAAATAATTAATAATCTCACTTGCATAATCGTGCTACTGTATGTTGCATAGATTAAACGTATCGTTATCCACCTGGAATACTTACTTACTCAAATATCTG
TGTATTAATTTATTTTATGCTTTATATGTGATACGCATGTAAGAATTTTGAAATATGGCACACAGACTATAAATTGCCCGTAACTA
>LE_HBa0053B14_SP6_43466 (trimmed for quality and cloning vector)
ACCCCACCCTAGTGGCTTGCATGGAGACAGAACCTCTGAATTTG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.86185
Expected error %
0.831567
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0053B14
Clone
Clone name
hba-53b14
LE_HBa0053B14
P053B14
Clone type
BAC
Contamination
none
Estimated length
90,740
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found