Clone Read LE_HBa0053H05_T7_43737

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0053H05_T7_43737
Primer
T7
ID from Seq. Facility
LE_HBa_053_H05-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
81 trimmed for vector and quality, 640 raw
Sequence
>LE_HBa0053H05_T7_43737 (raw untrimmed)
AAAAACAAAACAATCATATTGGGTATGTATTGTTTTTTTCTTTCGAAATTTTTCGAACTAATCTATCTTTCATAAATGATTAAATTTTTTACTTATTCCA
TAATTCTTCCTAAATAATTTTTTTTTTTTGGCCATACTTGAATCATAAATTTTAATTTTAATTGGCTCACTAGAATCGAAATTGTCAATGAATGTACAAT
AAACACCTCAATACTTTAGGTTTATATATGAAATGAACATTTTACTGGATGGATAAATAAGGGATAATTGTATATATACCAACTATACCAACTCAATGGA
GACTCGGTTTACTAATATGCTCCATATCAACGTTCTCAAGTTGTAGCTGCTTTCCAAAACTCTTCCACTCTCCTCTGCCCCCCTCCTTAACAAGATCGTT
ATTGGCTCCTTTTATCACTCCAATCTCTTTACCACTCCACCCCTCCCCCGCTAACTAATAACCTCACACATTATCCATCACGTCAACTGCATTATATATA
TGCCCACCGCTCTACTCACTGGTGAAACCTTCCCTTTTCCTCCACTTTCTCTTTTCTGCCTCTCTTGTCTTATTTTTTTCTTTCTTTTTTATTTTCTCTT
TTCTCTCTACTAAATTCCACCTCCCCGCAACTTCGACCAC
>LE_HBa0053H05_T7_43737 (trimmed for quality and cloning vector)
AAATTTTTTACTTATTCCATAATTCTTCCTAAATAATTTTTTTTTTTTGGCCATACTTGAATCATAAATTTTAATTTTAAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.696893
Expected error %
1.81038
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0053H05
Clone
Clone name
hba-53h5
LE_HBa0053H05
P053H05
Clone type
BAC
Contamination
none
Estimated length
134,280
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found