Clone Read LE_HBa0053J02_T7_43827

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0053J02_T7_43827
Primer
T7
ID from Seq. Facility
LE_HBa_053_J02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
719 trimmed for vector and quality, 895 raw
Sequence
>LE_HBa0053J02_T7_43827 (raw untrimmed)
TAACGGGGGTCCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTATCAATGAACATTGCAGGCTCTTTGGCCCAGTGTCTTGTTTGCAA
TGGCTGGAGGGATCCCTTTTCAGCCTTGGGAACCTCTCAACTCAATATGCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTA
CAGTTGTTATAGGTATCATTTTAACTTCAGCAACTTCTATTTTCCTGAAGCCGGTACAAGATGTTGGAAAGATGACATGTGCTATTCCCTTAATTATGAC
AGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGAAGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTCCGCTCT
GCTGTTCATTCTTCCTACAACGCTGATCAACAAAACCAAGCTTGATAATTATTCAAATGACTGTAAAGACGGAGTCAGGTATGCATCAGTATGCTATACT
TCCCTTGTCAATTCCTACAATGTTTATGGTTCCTTTCTTCTGATCATTTCAAGGAAATCGACCTTTTTTTTGGGCTTTAGGTTGTCGTAATGCTTTCATG
TATACGCGTTGAGTTACATGACTTGCATGTGATGAACTGATACAATTCCTCATCCCTTTGTGTGTCTTCTCATGTTCCTCTAGTTATAAGAGTAAAGTGC
AGGATATAATTGTATGTACTAACATTCGGTCAGGCATATTGACGCGTCTACGCTGTTATAGAACTTTGATTACAAATCGCAGAAAATGGATGTCCAACTT
ATTGCCCATTTGCAGGACTGATGGAGTTACTTCCCTTCAACTTACAATTTTTTTCCTGGTTTTGTGCCCTGAGCATCCTTAAATATAATTCCTAT
>LE_HBa0053J02_T7_43827 (trimmed for quality and cloning vector)
AGCTTTTATCAATGAACATTGCAGGCTCTTTGGCCCAGTGTCTTGTTTGCAATGGCTGGAGGGATCCCTTTTCAGCCTTGGGAACCTCTCAACTCAATAT
GCTTTTGCTTTCGCTGGTTTGTCAGTCACCGTAGTTGTCTCTTCCAGCATTACAGTTGTTATAGGTATCATTTTAACTTCAGCAACTTCTATTTTCCTGA
AGCCGGTACAAGATGTTGGAAAGATGACATGTGCTATTCCCTTAATTATGACAGGAACAACCTTGAATTATTACCTTGACGACAAAATTAACAAAGCTGA
AGTTCTGTTTCCTGGAGTTGCATGCTTCTTGGTTGCCGTTTGTTTCCGCTCTGCTGTTCATTCTTCCTACAACGCTGATCAACAAAACCAAGCTTGATAA
TTATTCAAATGACTGTAAAGACGGAGTCAGGTATGCATCAGTATGCTATACTTCCCTTGTCAATTCCTACAATGTTTATGGTTCCTTTCTTCTGATCATT
TCAAGGAAATCGACCTTTTTTTTGGGCTTTAGGTTGTCGTAATGCTTTCATGTATACGCGTTGAGTTACATGACTTGCATGTGATGAACTGATACAATTC
CTCATCCCTTTGTGTGTCTTCTCATGTTCCTCTAGTTATAAGAGTAAAGTGCAGGATATAATTGTATGTACTAACATTCGGTCAGGCATATTGACGCGTC
TACGCTGTTATAGAACTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.967687
Expected error %
1.19479
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g03590.1 Score 83 E Value 1e-16 Identity 14.20% Align. Length 329bp (45.76%) Frame 3
68415.m00319 expressed protein similar to SP|Q41706 A3 protein (unknown function) {Vigna unguiculata}
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g03600.1 Score 82 E Value 3e-16 Identity 14.20% Align. Length 329bp (45.76%) Frame 3
68415.m00320 hypothetical protein similar to SP|Q41706 A3 protein (unknown function) {Vigna unguiculata}
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM63172.1| Score 83 E Value 6e-15 Identity 14.20% Align. Length 329bp (45.76%) Frame 3
putative integral membrane protein [Arabidopsis thaliana] gb|AAD20067.1| expressed protein [Arabidopsis thaliana] ref|NP_565303.1| expressed protein [Arabidopsis thaliana] pir||C84450 hypothetical protein At2g03590 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD20068.1| Score 82 E Value 1e-14 Identity 14.20% Align. Length 329bp (45.76%) Frame 3
unknown protein [Arabidopsis thaliana] ref|NP_178458.1| hypothetical protein [Arabidopsis thaliana] pir||D84450 hypothetical protein At2g03600 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0053J02
Clone
Clone name
hba-53j2
LE_HBa0053J02
P053J02
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found