Clone Read LE_HBa0067D16_T7_51247

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0067D16_T7_51247
Primer
T7
ID from Seq. Facility
LE_HBa_067_D16-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
649 trimmed for vector and quality, 806 raw
Sequence
>LE_HBa0067D16_T7_51247 (raw untrimmed)
CTGGGACCCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCAAATGATAGCCACCAAGACCCCCTATAAGGGGTAAAACTGTGGAACTACTA
ATCCACATCCTGCCTTAAGGGGAGNNACNNACAGGNCCAACCACNANAACCANCCAAAANCAACANNAANNGGAANNAANGGGANCACCCGGGGGAAAAG
AAGGGAAAANANGAAGGGANNCCNGCCACCACACNAAAANNNNCCACNCNAAANAACAGGGAGGNGAAGNNCAAANGANAAAAGGANAACCAGGNNGNAA
NNAAANNGAAACCAACANNNNNAAANCNNNCANAACNNNNAANNNCCGGNNNCNAAGNGCAAANCACNCAACNGAACNNGNAGNCANCNANNNGNNNCAN
AGNCAANANAGNANNNANANNNAGGGCAANCNACANCNNCAGNCCACCCACNCNAAAGCANANCNGACAAGAGNAGNAAANGAGGNGGCAGACCNANCCC
CACNCAACAAANGGGAGAGGNGGANAACCACCCNCAGGCGGAGGCCNNAGAGAGGGAGGCAGAANGCNCAGNGANGCNCCGGCCNNNNCNCNGAACACAN
CACCNGCNACAACCACACANCACAACNAGANNNAGAAGAAAAACNACCAAGAGCANCAGCAGAANAACNGGGGAANNGGAAAAACACAACACCNGACANN
NNAAGNGAAAANAGGAAGAAAAAACANGCAAAAGCAAGGCCNGCCNGGAAAAGAGGCNGAACCAAAAAGGNGACNACNNGAANGGGAACCCCNCCCCACC
AAACCC
>LE_HBa0067D16_T7_51247 (trimmed for quality and cloning vector)
AGCTTCAAATGATAGCCACCAAGACCCCCTATAAGGGGTAAAACTGTGGAACTACTAATCCACATCCTGCCTTAAGGGGAGNNACNNACAGGNCCAACCA
CNANAACCANCCAAAANCAACANNAANNGGAANNAANGGGANCACCCGGGGGAAAAGAAGGGAAAANANGAAGGGANNCCNGCCACCACACNAAAANNNN
CCACNCNAAANAACAGGGAGGNGAAGNNCAAANGANAAAAGGANAACCAGGNNGNAANNAAANNGAAACCAACANNNNNAAANCNNNCANAACNNNNAAN
NNCCGGNNNCNAAGNGCAAANCACNCAACNGAACNNGNAGNCANCNANNNGNNNCANAGNCAANANAGNANNNANANNNAGGGCAANCNACANCNNCAGN
CCACCCACNCNAAAGCANANCNGACAAGAGNAGNAAANGAGGNGGCAGACCNANCCCCACNCAACAAANGGGAGAGGNGGANAACCACCCNCAGGCGGAG
GCCNNAGAGAGGGAGGCAGAANGCNCAGNGANGCNCCGGCCNNNNCNCNGAACACANCACCNGCNACAACCACACANCACAACNAGANNNAGAAGAAAAA
CNACCAAGAGCANCAGCAGAANAACNGGGGAANNGGAAAAACACAACAC

This is probably not a useful sequence.

Problems:
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
1.00468
Expected error %
36.2538
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0067D16
Clone
Clone name
hba-67d16
LE_HBa0067D16
P067D16
Clone type
BAC
Contamination
none
Estimated length
77,539
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found