Clone Read LE_HBa0067N08_SP6_51710

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0067N08_SP6_51710
Primer
SP6
ID from Seq. Facility
LE_HBa_067_N08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
682 trimmed for vector and quality, 768 raw
Sequence
>LE_HBa0067N08_SP6_51710 (raw untrimmed)
AAAAAGGTTTTCCTTTCACGTATTGAGNNGGNNNNTCNCCANNTAAATANCACTTCTGCACTCAATTTTCACCAAATCCAACACTCCATACAAGAACTTA
TTCATCTAAGACCTGGAGTTAGCAACCATATGAGGAGTATACTTGGACAGTTAGTTAAACTTGAGTCCATACTCTTAGACTATCATCTAACTTTGTCTTA
AGTTCATTGATTATTGGGCTTTCCCTTATCTTAAATCTATTGGAAAAAACCTGTCGAGAAAAAAGTCTCACTAAAGTGATAGGAGCCGCATTTGCACCCC
TATTCTCCTTCTACTGAGTGTACCAAATATGAATAACATCTTTCAAATGGTATGATGCCAACTCAACCCGATCATTCCTAGTGAGTTGCATTACCTCAAA
CATTTTCTTGATCTCATCCAAGAAACTCTGAGAATCCTCATTAGCTTGTGATCCTAAGAACTCAAAGAGATTCATCCTGAAAAAGTTATGGACCGTTACT
GCTATTGATCCACCATTTTCATTGACATGAGCATGAACCCGATTTATCTGGTTATTCATACTCTGAGCCAACATCTGTATGGCATTTCTAAACTAGGCAT
TGGAGACTTCCTGATCTGGGACTGGAGGAGCTGCATTTGCATTCCTGGCATTCGCATTCTTACTGTTAGCTCTACGAGGAGGTGAGATCTAAAACGTAGA
ACGTTAAGTTAGAATGGAAAAAGATCAGACCTTACATACGGAAGAATAACAAGAAAGTGAAGTTTTCT
>LE_HBa0067N08_SP6_51710 (trimmed for quality and cloning vector)
CACTTCTGCACTCAATTTTCACCAAATCCAACACTCCATACAAGAACTTATTCATCTAAGACCTGGAGTTAGCAACCATATGAGGAGTATACTTGGACAG
TTAGTTAAACTTGAGTCCATACTCTTAGACTATCATCTAACTTTGTCTTAAGTTCATTGATTATTGGGCTTTCCCTTATCTTAAATCTATTGGAAAAAAC
CTGTCGAGAAAAAAGTCTCACTAAAGTGATAGGAGCCGCATTTGCACCCCTATTCTCCTTCTACTGAGTGTACCAAATATGAATAACATCTTTCAAATGG
TATGATGCCAACTCAACCCGATCATTCCTAGTGAGTTGCATTACCTCAAACATTTTCTTGATCTCATCCAAGAAACTCTGAGAATCCTCATTAGCTTGTG
ATCCTAAGAACTCAAAGAGATTCATCCTGAAAAAGTTATGGACCGTTACTGCTATTGATCCACCATTTTCATTGACATGAGCATGAACCCGATTTATCTG
GTTATTCATACTCTGAGCCAACATCTGTATGGCATTTCTAAACTAGGCATTGGAGACTTCCTGATCTGGGACTGGAGGAGCTGCATTTGCATTCCTGGCA
TTCGCATTCTTACTGTTAGCTCTACGAGGAGGTGAGATCTAAAACGTAGAACGTTAAGTTAGAATGGAAAAAGATCAGACCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966615
Expected error %
0.10799
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 94 E Value 6e-24 Identity 44.50% Align. Length 558bp (81.82%) Frame 3
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 85 E Value 5e-21 Identity 42.60% Align. Length 558bp (81.82%) Frame 3
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0067N08
Clone
Clone name
hba-67n8
LE_HBa0067N08
P067N08
Clone type
BAC
Contamination
none
Estimated length
106,934
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found