Clone Read LE_HBa0002J08_SP6_53054

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0002J08_SP6_53054
Primer
SP6
ID from Seq. Facility
LE_HBa_002_J08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 749 raw
Sequence
>LE_HBa0002J08_SP6_53054 (raw untrimmed)
GGCATACCTGAGATTATATCTTCTGCCTCGTAATGATAAATGACGCCTTACTTACTATTGCGTGTGAACCGTCACCTTTTAAATCCAATTTCATTTATTA
TTAATCCTCCAACTCCCCCCTTAAACAACTTGATGCTGTTATTGGGACACTGTCCAATCCTGCAAGGAATTGCAGCTACTTTCTCTTACTGGCATCCTTA
CATATCCTGTGTTTGATTACATCTAGGCTCCATGCTAATAAGTTACACATGCTTTACTTATCTTTTGCGGGGGATAGCGATCTATGTTAATCTATCTGCC
GCTTTTACTTGCTTAATCCTTGTGTAGTTGTAATGCTGATTAAGACCCTTTGTTGAGCGACATTTGCAGAAATATAATTTTAAACTTCACTACTCGGCCT
AGCTTTTGAGATGAAAGTTCACAGGGTTTGTTATATACTAGTATCTATATCCTTTTAAATCTTTACCTTGACTAAGCTTTTATCATATAAATGGGACTTC
AGACAAAGTTAGACATAAATGAAGCTTGGAACGCCAAATGCAAATCCTCGGACTAATCTATGAATTCATGTGAATCCCTTTCTTTCTGTCAAAATCCTAT
ACATATGTCAATCTAATTGTTATTGATATTAACGTGAGGTCTCCACAAATACTTGTAAACATCAAATCCAGAATTCCTCTAGCGTACGAGATAATACATA
TGTACTAATATGCAGTCTAATAGAA
AATTAATGTGTATGTGAATGGAAA
>LE_HBa0002J08_SP6_53054 (trimmed for quality and cloning vector)
AATTAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.17862
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0002J08
Clone
Clone name
hba-2j8
LE_HBa0002J08
P002J08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found