Clone Read LE_HBa0003P22_T7_54139

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0003P22_T7_54139
Primer
T7
ID from Seq. Facility
LE_HBa_003_P22-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
271 trimmed for vector and quality, 769 raw
Sequence
>LE_HBa0003P22_T7_54139 (raw untrimmed)
CCTCGGAACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTTTTTCAAGTAAATATATTTTCCGTTTAGGGGCCCCGAAGCCACACACC
AGGCANAAANAGCACCATCCGGAGGAGCACCACNAAAGGCAGCCGCANACCCAGGAAGCGAGGCCCGAAACAACCAACCGACCAAAAAACCAGACGAACC
CCCGANAGCAAACAAACGGCNAACCGCAAAAACGGGAANNCGNAGCCNNCCACCGGGNGNGCAGAAACCGAACAGGCGCAAGGGCACGAAAAAAAAAAGC
CAAAAAAAAAAACCCGCCACGGCAGCCNAGAAAAAGACCCAAAAAAAGGGCACACCAAAGCACACGCAAAGAAAGCGCAAGGAGAGGGCCCACCAGACAA
GAAACAGACCANAAAAAGCCCGGAAAAAGAAAAGCCACCCCCAAAAACCCAACAGACGCACGACAGAAACGAAACCCAAAGGAGCAAACCAAAAAACCCA
GACCAGAAACCCCGGGAAAACAAAACCCCACACACCCAAAACCCAGAGCAAAAAGAACAGGAAGGCGCGCGACAAAACAACCAAAAAGAAAAAAGGACAC
AAGCCAGGAGCACACAGAAAAAGAAACAAAGGGCCCAGCAGGGCAAAACGCCAGGCGGGCCCACGAAACCAAACCCAACAGGGGCAAACCAGGAAAAAGG
GGAAAACACGGACCGACCCCCGAACCCCCCAAAAAGCCCCGACAAAAGAGGAGAAAAACACCAAGAAGA
>LE_HBa0003P22_T7_54139 (trimmed for quality and cloning vector)
AGCTTGTTTTTCAAGTAAATATATTTTCCGTTTAGGGGCCCCGAAGCCACACACCAGGCANAAANAGCACCATCCGGAGGAGCACCACNAAAGGCAGCCG
CANACCCAGGAAGCGAGGCCCGAAACAACCAACCGACCAAAAAACCAGACGAACCCCCGANAGCAAACAAACGGCNAACCGCAAAAACGGGAANNCGNAG
CCNNCCACCGGGNGNGCAGAAACCGAACAGGCGCAAGGGCACGAAAAAAAAAAGCCAAAAAAAAAAACCCG

This is probably not a useful sequence.

Problems:
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.947542
Expected error %
16.2063
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0003P22
Clone
Clone name
hba-3p22
LE_HBa0003P22
C08HBa0003P22
P003P22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found