Clone Read LE_HBa0062J03_T7_54581

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0062J03_T7_54581
Primer
T7
ID from Seq. Facility
LE_HBa_062_J03-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
674 trimmed for vector and quality, 808 raw
Sequence
>LE_HBa0062J03_T7_54581 (raw untrimmed)
CCTGGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGACAAATACAAAGAAGAGCAACCATTAAGGGGATCGTGATGNNAAGATTNT
TTNTCTTAAAGCCCTTTAGGGCGANAAAGGAAGTAATTTATTGGATATTAAAGGTAGGTTATAATGGATTTAAAAATTTGNGAAATAAGAATTAAGAAAT
TTTTGATGAGTNAGAATGTTGATATTTATGTATTTAAAGTAGTAGAATTTAGTGAAATTTAGTTAGTTTTNGTAAGTTAGGGATAAAAAATAATATAATT
GAAGTTTGGTAAATATAAATGAAGTAGTTGGTTGTATAGTATGGGGATGAGGGAAGGTAGTTTTAAGGTTGTATAATATAAATGAAGAAATTTNTTGTAG
ATTATAGATTTGTGTTGGTGGTATATAATATGTGTTAATTAGGAAAGTAAAATGANTTTTNAGAATATTTAGAGAGTGTTAAAATAAGTTGAATATGTAT
AAAAGTATTGAATATGGTGAAATGTTATATGTTTTGAATTGTGGGGTAGTTTGGTTANGGTATAAGAAGGAATATTATTTATGTATAAAAAATTAGATTA
GTTTTATTATGTTTGGTAAAAGTTTTTTATTAGGTTGAAAAGTTAAGATGAATTATAAAATGTTTGGATGTATTTTTGTAGTTATAGATAATTAATATTA
ATATTGGTTATGAGGGAATTTATGTTTAAATTTATGGAGGGTAAAATGTGGAATAAGTTATGTGGTTTTTAGTTATAAATGTATTTAAGTGATAAATTAT
ATTTTTAT
>LE_HBa0062J03_T7_54581 (trimmed for quality and cloning vector)
AGCTTGACAAATACAAAGAAGAGCAACCATTAAGGGGATCGTGATGNNAAGATTNTTTNTCTTAAAGCCCTTTAGGGCGANAAAGGAAGTAATTTATTGG
ATATTAAAGGTAGGTTATAATGGATTTAAAAATTTGNGAAATAAGAATTAAGAAATTTTTGATGAGTNAGAATGTTGATATTTATGTATTTAAAGTAGTA
GAATTTAGTGAAATTTAGTTAGTTTTNGTAAGTTAGGGATAAAAAATAATATAATTGAAGTTTGGTAAATATAAATGAAGTAGTTGGTTGTATAGTATGG
GGATGAGGGAAGGTAGTTTTAAGGTTGTATAATATAAATGAAGAAATTTNTTGTAGATTATAGATTTGTGTTGGTGGTATATAATATGTGTTAATTAGGA
AAGTAAAATGANTTTTNAGAATATTTAGAGAGTGTTAAAATAAGTTGAATATGTATAAAAGTATTGAATATGGTGAAATGTTATATGTTTTGAATTGTGG
GGTAGTTTGGTTANGGTATAAGAAGGAATATTATTTATGTATAAAAAATTAGATTAGTTTTATTATGTTTGGTAAAAGTTTTTTATTAGGTTGAAAAGTT
AAGATGAATTATAAAATGTTTGGATGTATTTTTGTAGTTATAGATAATTAATATTAATATTGGTTATGAGGGAA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.858989
Expected error %
9.17054
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0062J03
Clone
Clone name
hba-62j3
LE_HBa0062J03
C04HBa0062J03
P062J03
Clone type
BAC
Contamination
none
Estimated length
145,453
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found