Clone Read LE_HBa0122A16_T7_57247

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0122A16_T7_57247
Primer
T7
ID from Seq. Facility
LE_HBa_122_A16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
753 trimmed for vector and quality, 809 raw
Sequence
>LE_HBa0122A16_T7_57247 (raw untrimmed)
CCTGGGACCCGCGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATCACATGAGATCAAAAAAGTTGACTAAATGTCTCAAACATGTCAATAGCA
GTTTCACCAACTGGAGTTCTACACATTATGTTACAACAACAAAAGGAAGATACAAATCTAAAACATTACAATGAAAACTAAGTTTAGTCTCACTTCCTAC
ATCGCCAAGACGACACTGAGAAAAGTGGGCGATCCTGCCAGCATATCACCACGCAACCATTATCTTCTTTGATCTTGTATCCTTCACAACTGTAACTCTG
CAACAACCTTCTTGCCTGCAACATAGCATAATAACTCAAAGGCACATTCCCAAAACCAGATGTGTCGAATCTTTGGAACCACTTTTCGAGCTTTTCATGC
CTCTCCTTTCGTTCGATCCCTTCACATGCTATAATGTTTCTAATCTCTTCACCTAATAACATCTTTTCCACCTTTAATCTCTCTAATGATGTTCTTGGCA
GCGTCGATTCAAGACAATCAAATAATGCAGCATAAAAATGTAACGACTCTGATAGCCTCTCCATAAGAGTTGTCCCATTATGGTTAGCATCTTGTTCTGT
TACCACCATAACTTTTGGTGATAAACCCCACAAAGCATTGAGGAAACTTATCCATCTTTGTTGAACCAGTTGAACATAGCGGGGATGAAGAAGCGGTGTC
ATTGCTTGGACTGCACCATTAGCCATATTCTTTTTCAAGAAAATTCCCCTAAATTTTTTTGGGTTGACTAGTGGCCCTGTTTTAAGTTAACCCCATTTTG
AATGCTTAA
>LE_HBa0122A16_T7_57247 (trimmed for quality and cloning vector)
AGCTTATCACATGAGATCAAAAAAGTTGACTAAATGTCTCAAACATGTCAATAGCAGTTTCACCAACTGGAGTTCTACACATTATGTTACAACAACAAAA
GGAAGATACAAATCTAAAACATTACAATGAAAACTAAGTTTAGTCTCACTTCCTACATCGCCAAGACGACACTGAGAAAAGTGGGCGATCCTGCCAGCAT
ATCACCACGCAACCATTATCTTCTTTGATCTTGTATCCTTCACAACTGTAACTCTGCAACAACCTTCTTGCCTGCAACATAGCATAATAACTCAAAGGCA
CATTCCCAAAACCAGATGTGTCGAATCTTTGGAACCACTTTTCGAGCTTTTCATGCCTCTCCTTTCGTTCGATCCCTTCACATGCTATAATGTTTCTAAT
CTCTTCACCTAATAACATCTTTTCCACCTTTAATCTCTCTAATGATGTTCTTGGCAGCGTCGATTCAAGACAATCAAATAATGCAGCATAAAAATGTAAC
GACTCTGATAGCCTCTCCATAAGAGTTGTCCCATTATGGTTAGCATCTTGTTCTGTTACCACCATAACTTTTGGTGATAAACCCCACAAAGCATTGAGGA
AACTTATCCATCTTTGTTGAACCAGTTGAACATAGCGGGGATGAAGAAGCGGTGTCATTGCTTGGACTGCACCATTAGCCATATTCTTTTTCAAGAAAAT
TCCCCTAAATTTTTTTGGGTTGACTAGTGGCCCTGTTTTAAGTTAACCCCATT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.964817
Expected error %
0.688744
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g50420.1 Score 258 E Value 3e-69 Identity 26.10% Align. Length 455bp (60.42%) Frame 3
68414.m05651 scarecrow-like transcription factor 3 (SCL3) identical to GB:AAD24404 GI:4580515 from [Arabidopsis thaliana] (Plant J. 18 (1), 111-119 (1999))
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g66350.1 Score 134 E Value 5e-32 Identity 14.30% Align. Length 452bp (60.03%) Frame 3
68414.m07536 gibberellin regulatory protein (RGL1) similar to GB:CAA75492 from [Arabidopsis thaliana]; contains Pfam profile PF03514: GRAS family transcription factor; identical to cDNA RGL1 protein GI:15777856, RGL1 protein [Arabidopsis thaliana] GI:15777857
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD24404.1| Score 258 E Value 2e-67 Identity 26.10% Align. Length 455bp (60.42%) Frame 3
scarecrow-like 3 [Arabidopsis thaliana] pir||T51235 scarecrow-like protein 3 [imported] - Arabidopsis thaliana (fragment)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM14199.1| Score 258 E Value 2e-67 Identity 26.10% Align. Length 455bp (60.42%) Frame 3
putative scarecrow 3 protein [Arabidopsis thaliana] gb|AAL07233.1| putative scarecrow 3 protein [Arabidopsis thaliana] ref|NP_175459.1| scarecrow-like transcription factor 3 (SCL3) [Arabidopsis thaliana] pir||E96540 hypothetical protein F11F12.22 [imported] - Arabidopsis thaliana gb|AAF87889.1| scarecrow-like 3 protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0122A16
Clone
Clone name
hba-122a16
LE_HBa0122A16
C02HBa0122A16
P122A16
Clone type
BAC
Contamination
none
Estimated length
112,554
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found