Clone Read LE_HBa0012A08_SP6_5774

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012A08_SP6_5774
Primer
SP6
ID from Seq. Facility
LE_HBa_012_A08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
659 trimmed for vector and quality, 900 raw
Genbank Accession
DU025390
Sequence
>LE_HBa0012A08_SP6_5774 (raw untrimmed)
GGCTTTTTGGATTCTACACCTCATTTGAGGTATGTTTTCTTGGGAAAAGGTGACACTTTGCCGGTAATCATTGCTTCAGATTTAAATGTGGAGCAAGTGG
AGTGTCTTGTAGAGGTGTTGAAGAGGTTCAAACGAGCCATTGGTTGGACTATTCCGGACATTATTGGGATTCCACCCGGTATTTATTCACACAAAATCCA
ACTCATGCCCAATCATAAGCCAAGTATAAAGCATCAAAGATGGTTAAATCCACATATGCAAGAGGTAGTGAAGAAGGATATTATTAAGTGGTTGGATGTC
GGAGTCATATATCCGATCGCTGATAGTAGTTGGGTATGACATGTTCAGTGTGTGCCTAAGAAAGGAGGAACGATTGTGGTCCCTAATGAGAAAAATGAGT
TTGTTCCAATGAGGCCGGTGACCGGATAAAGAGTGTGTGTGGATTACCAGAAATTGAATGCATGGACTGAGAAGGACCATTTCCCTTGGTCCTTCATTTA
TCAAATATTGGATAGATTTGCAAGAAATGGGTGCTATTGTTTTCTTGATGGTTATTAGGGTTATAACCAAATCTCTATTGCAACAGAAGATCAAGAGAAA
ACCACCTTTACTTGTCCTTATGGAACTTTTGCGTTCAAGAGGATGCCCTTTGGGTTGTGTAATGCATCGGCTACTTTTCAGAGATTATGATGTCTATATT
CTCCGATATGGTGAAGGACACCATTGAAGGTTTTTATGGATGATTTTCTGTTTGTGGTGACTCGTTTGATTCATTATTTATGTCACTATGGCTGAAGTTC
TCAAGAAGGGGTGAAATTTGTAACCCTTATGCTAAATTGGGGATAAATGGTCCTTTCATGGGGGAAAATGGGGAAATGGTTTGGGGGCCCCTCCCCCATC
>LE_HBa0012A08_SP6_5774 (trimmed for quality and cloning vector)
CCTCATTTGAGGTATGTTTTCTTGGGAAAAGGTGACACTTTGCCGGTAATCATTGCTTCAGATTTAAATGTGGAGCAAGTGGAGTGTCTTGTAGAGGTGT
TGAAGAGGTTCAAACGAGCCATTGGTTGGACTATTCCGGACATTATTGGGATTCCACCCGGTATTTATTCACACAAAATCCAACTCATGCCCAATCATAA
GCCAAGTATAAAGCATCAAAGATGGTTAAATCCACATATGCAAGAGGTAGTGAAGAAGGATATTATTAAGTGGTTGGATGTCGGAGTCATATATCCGATC
GCTGATAGTAGTTGGGTATGACATGTTCAGTGTGTGCCTAAGAAAGGAGGAACGATTGTGGTCCCTAATGAGAAAAATGAGTTTGTTCCAATGAGGCCGG
TGACCGGATAAAGAGTGTGTGTGGATTACCAGAAATTGAATGCATGGACTGAGAAGGACCATTTCCCTTGGTCCTTCATTTATCAAATATTGGATAGATT
TGCAAGAAATGGGTGCTATTGTTTTCTTGATGGTTATTAGGGTTATAACCAAATCTCTATTGCAACAGAAGATCAAGAGAAAACCACCTTTACTTGTCCT
TATGGAACTTTTGCGTTCAAGAGGATGCCCTTTGGGTTGTGTAATGCATCGGCTACTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963684
Expected error %
0.057125
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF24529.1| Score 245 E Value 6e-64 Identity 18.60% Align. Length 650bp (98.63%) Frame 2
F7F22.15 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB81136.1| Score 234 E Value 1e-60 Identity 18.30% Align. Length 650bp (98.63%) Frame 2
putative athila transposon protein [Arabidopsis thaliana] pir||D85075 probable athila transposon protein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012A08
Clone
Clone name
hba-12a8
LE_HBa0012A08
C00HBa0012A08
P012A08
Clone type
BAC
Contamination
none
Estimated length
107,152
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found