Clone Read LE_HBa0012A08_T7_5775

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012A08_T7_5775
Primer
T7
ID from Seq. Facility
LE_HBa_012_A08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
751 trimmed for vector and quality, 889 raw
Genbank Accession
DU025391
Sequence
>LE_HBa0012A08_T7_5775 (raw untrimmed)
ACTCGGACCCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCTTGAATAGATTTCACTTTATCTAACGATTCCAGCAGAAGGTCAGTACCT
CAAGGTCTAACTTCAAATGCATCAAACCACCCAATGGGAGACCTACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGC
TATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCAATGTCCTCCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATTGT
TCGCTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCAAACCTAGTACCCAATTCCTCATGCAATGTTTTCCGAAACTTGGAAGTAAAC
TGCGTTTGTCACGACCCAAAATGAGCCGCGAGTGGCACCACACTTATCCTCGTATGTGAGCGAACCAACAAATCTAAGCCCCAACATTTACCAATATTTC
AATCATAATGAACAAAATATAATGCGGAAGACTCAAAACTTATTAATATAACCAATAAATAAGCTTCTAAAGTTTATCAATTATTATCCCCAAAATCTGG
AAGTCATCACACCAAGAACATCTATCCTCAAATTTCTAAATCTAAGAGTATTTAAGAAGCTAAATTAAGTAAACAGATGGTCCATGTCCGAACTTCAAGG
ACATCAAGACGTGAATGAGAGAATCCAGTACGAGCTAGGAACAATAGCTCACCCTGAAATTTGATATGCTGGAGACTGGCTAGAGTTGAGGGCGAGTCCG
AGTCGATGGCACGTTTTGCTGCACTCCACAAAATAACAATAAGAAAAATACAAGTAGGGGGTATAGTCAAAGAAAAAACGTACCTGAAT
>LE_HBa0012A08_T7_5775 (trimmed for quality and cloning vector)
AGCTTTCTTGAATAGATTTCACTTTATCTAACGATTCCAGCAGAAGGTCAGTACCTCAAGGTCTAACTTCAAATGCATCAAACCACCCAATGGGAGACCT
ACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCAA
TGTCCTCCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATTGTTCGCTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAA
GGTCAAACCTAGTACCCAATTCCTCATGCAATGTTTTCCGAAACTTGGAAGTAAACTGCGTTTGTCACGACCCAAAATGAGCCGCGAGTGGCACCACACT
TATCCTCGTATGTGAGCGAACCAACAAATCTAAGCCCCAACATTTACCAATATTTCAATCATAATGAACAAAATATAATGCGGAAGACTCAAAACTTATT
AATATAACCAATAAATAAGCTTCTAAAGTTTATCAATTATTATCCCCAAAATCTGGAAGTCATCACACCAAGAACATCTATCCTCAAATTTCTAAATCTA
AGAGTATTTAAGAAGCTAAATTAAGTAAACAGATGGTCCATGTCCGAACTTCAAGGACATCAAGACGTGAATGAGAGAATCCAGTACGAGCTAGGAACAA
TAGCTCACCCTGAAATTTGATATGCTGGAGACTGGCTAGAGTTGAGGGCGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.97081
Expected error %
0.225301
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 201 E Value 2e-50 Identity 22.90% Align. Length 422bp (56.19%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 194 E Value 2e-48 Identity 22.20% Align. Length 422bp (56.19%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012A08
Clone
Clone name
hba-12a8
LE_HBa0012A08
C00HBa0012A08
P012A08
Clone type
BAC
Contamination
none
Estimated length
107,152
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found