Clone Read LE_HBa0123G24_SP6_58318

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0123G24_SP6_58318
Primer
SP6
ID from Seq. Facility
LE_HBa_123_G24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1366 raw
Sequence
>LE_HBa0123G24_SP6_58318 (raw untrimmed)
CATCTNTNTACTCNCTTATTANCATTGTNAANNCGTATTAGATGNAATGCTCTTATNGANGCTATATACACCCCCACACACATATGAAGGAGGAGCACAC
ACATACTGATATATCGNGCGATTAATATNTCNAACNCAATGTCTGTCTATATCATAACTCTGCTATGTCAGAGAGTGAGACANAACAGACTCAAAGTGAN
CTATCANCGTGTGTGATATATNACANTGTGACAAATCATTGTGAACTGATATNACTCACACGAGTANCTGAAGCTATCGCTAACTATATACGCTGATNCA
CTCTNATACTCCACTGATTCTNGATCTAGAATAGATCTCGTACTACAATGCACTATGAACGTATTGAGTCATATCAGCCGTACGANCCTCTTCGTCANAA
TAGATACAATCGAAGAGTACTAGTCTNAGATATGTGTCGTGACTAGATATGCATAGTATTATAAGTTGCTATATCGTGAGACAATAGGANGAACGTGCGT
ACGAGATATGAGCACGNCGAAGCTACGATAGACANAGCTGCACGNGTACGACAACTATACTAACTACNGACTACAGGNCATACCTGAGATCTATCGCTAC
ACGAGATATGGCGATNTATGATTCACNGCATTCGCAGTTCTCACACTCACTATCTCTCTACAGACACATACTCTACATCATATGTACACTTCTACGACTA
GCTCCGCACTCATGAACTTGCATTAGCAAGATAAACATGAAGTCTTCGTCTGTGTGCGAATGCGCCTGCTGCATATNCTNTACCANACCGCNCTTGCTCC
TGCTTCGCCGTANGTAGTGATAATATCATGATGCGTCACAGTCTGCTCTTCTATCCTACATCTTGTACACTGCTTGTGATGTCTATTCATAACTACCTAC
ATGATGCGCGGATAGTGCACATGATATACGCACATACACATCTGCTCTCTGGCACGCACTAGTACGCGCGAAGCACAAATGNGCAACTATAGACACGCAC
GTCAATGTACGTGCGAACTACTGT
CGACCTGCCTCTGAGCTAACATCTCCTCACAACACATATACTCGCCATATCACACTATCGTATCGACATCCTCTCT
GACAGCTACCACGGTCAGNCGTAATACGTGACTTCAGCATCCGACTACACCGTACGTGCNGTCACTGACGAGATCTTNGTGATAGAGCACTGCCCNCATC
TCNCATCCTTACATGCACACANACGCTACATCGCATGCATACATTACCTAATAACTGATCATCTTAGACACTCACTGACACTNTAACTTNCTATANATGC
TNCTCTCTCCATCTTCTCTTCATTATCTCGAGCGNCTNCACACACCGTATCCGTGGTCTTATGATG
>LE_HBa0123G24_SP6_58318 (trimmed for quality and cloning vector)
CG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.787577
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0123G24
Clone
Clone name
hba-123g24
LE_HBa0123G24
P123G24
Clone type
BAC
Contamination
none
Estimated length
177,039
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found