Clone Read LE_HBa0068C05_SP6_66536

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0068C05_SP6_66536
Primer
SP6
ID from Seq. Facility
LE_HBa_068_C05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1095 raw
Sequence
>LE_HBa0068C05_SP6_66536 (raw untrimmed)
CGCCGGGGTTTATACAAAAACTTAAATTAACATTAGCTATCATCCAACAGCAACTTTCATGAATATTTGCATATAAACTCCATAAATCTGATATTCCCGG
TATGAGGTATTTACTCACCCATGCTCAACTGATAGTAGTATTCTATCTAGCTATGAACTCTTTTACCAAATTACAGTTGGATCTCTCAACGCTCTACGCA
CTAGTTAATTCTGGCACTTTGCTACGAGCTCCCCTCTAAATTCAAATTTGGCTGAAAGTGTAAATTTCTTCCAGGATTCCGGTCGACCCCTTGATTGTAA
GAATATAGTATCTTCTCATATATCATTTGCGCTGGTTCGTTGCACCTCCCATAGGTACTAGCATGTTGTTATCACATTTGCATCTGGCATATGTCTGCTC
CTATTAGATCTATGAACGTGTGGAACTGGGTTGAGTGCAACATTCTACTTCTAAATGGGGTGCTTAGTTCCATTGCGTCGTAACAGTAGGTGCGTTGAGG
CCGCAGGGGTAGATCATAGACTATCCTTCAGCACTGCGACCAACCCATGACATAATTCGATACACCAAATCCAGCATATACATACATAACTTATATAATA
TGATATACTTCAATAAGTTTATAGATAGAACGCATCTACCCGCTTTATTTTTGCTTTCTTCAGAGAATCTCATTGAATTCCCTACTCGGCCTCTGCGCAC
TCAACATTCGCCTAACACTCTGATCGCCTCCANCGTGGTTTCAGTGGATACTCATACTACAGTCTGTCATGTTGTGAACCGTGAACTATCACAATATAAT
AAGCTTTAGGATATAATGTACTATCATATCTCATCAGTTCTATCTATCATATCTACCGATCTGTTATCTGTGTAGCGTTGGTTGACTGGAGGTCGCAATA
ACATGATAGGCGTGACGATCCGCTGTGCGTGAATTTCATAGCTACGTTCTAGTAGATATGCCGCTCGTAATGTCCGTGGTCATGTGTCACGGAGCAATGT
AACGTCAACACCGCACCATGCATCTGTGCTTGTTACATATGTCTGATGATAAATGCAAACAAGATGTCTTAATGAGGATTAATGGTGTGTCAATG
>LE_HBa0068C05_SP6_66536 (trimmed for quality and cloning vector)
ATATT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.558114
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0068C05
Clone
Clone name
hba-68c5
LE_HBa0068C05
C02HBa0068C05
P068C05
Clone type
BAC
Contamination
none
Estimated length
77,534
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found