Clone Read LE_HBa0105P09_SP6_68704

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0105P09_SP6_68704
Primer
SP6
ID from Seq. Facility
LE_HBa_105_P09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
113 trimmed for vector and quality, 788 raw
Sequence
>LE_HBa0105P09_SP6_68704 (raw untrimmed)
CTTAACTCTATCCCGCATTAGAGTAGAAATTCCCTCAAAGGAACAAAATACGAACACTACACATCGGACATTCTTCGACTTACTTTTTTCCATAAGGCAA
CTCAATGTCTCCATTGCAGATCAACCATTTGCTTTCTATAAGGGAATTGATACGAGTCTTCCGAAGCTCTGTTTAGATTCCCATTGACAACAAGGAAATT
CCATTTGGTCAACACACTTAACTCTTCTGCAGAGTTTCCTCTGCTTTTGTTTGATCTACTCCATAATCCCTGTTTTAATATTCATATTCATACAGGTTGA
ATCAACAGAGTTGTACATTCCTAATATATACACTTATCCTTTATTAATCTATAATCATTTTCTTTAATTTGATGAGAGAAAAATTCACTTGTTCATTTAG
CAATAATTCGTCTGTGGTCCTCCCCCATAACCGAAATTGAGTTCTCAGTTGAAAACACAGACTAATCTCCATGTCTGTTCATCACTATGTTTCTACATTG
AAATAATTAGATTATCAGATAAAATTTCCTTTTAATAATCTTGACCCCTACCTACCCATCCATTCCCAAATAAGAGTAGGCTACACTCACGCGGCATTTT
AATGAATATTTGGTATAATTTATTAATTTATACATATTGATTTTCTATGATATTACCTATACTGGTGTATTTATACACATTAAGCCTTCTAACAGTTCCT
TTCATTGTAGCTAGATTTTGTTCACATTTACATGTTACTTCATCTAGATAACATCACTGCTGGTGTTCTTCATATTATCTCCTTCTTG
>LE_HBa0105P09_SP6_68704 (trimmed for quality and cloning vector)
TCGACTTACTTTTTTCCATAAGGCAACTCAATGTCTCCATTGCAGATCAACCATTTGCTTTCTATAAGGGAATTGATACGAGTCTTCCGAAGCTCTGTTT
AGATTCCCATTGA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.929474
Expected error %
1.73162
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0105P09
Clone
Clone name
hba-105p9
LE_HBa0105P09
P105P09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found