Clone Read LE_HBa0136J01_SP6_69936

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0136J01_SP6_69936
Primer
SP6
ID from Seq. Facility
LE_HBa_136_J01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1543 raw
Sequence
>LE_HBa0136J01_SP6_69936 (raw untrimmed)
TTACTCTCTTATACTCTCTGAGAAGCTGCGTCAAAGATAATACATAGATGGAGTAGATATTATTATTGAATCCCACTAGCTGCTGTCAGGATGAATGGGA
GGTGTCACATCTAGGATATGAAGAAGGTGAGTTACATTCCACCCCTCCTATACTACAGAGAGGAGANAACTTATCTGGTATTCTATAGNCGGCTATAGGG
AAGATGTGACTCTCCTCTCACTAGTGTGTCTCTATTGCTGGACTTAGGTGATTGTGTGCATATGCTGGCTGCAGTGTCTCTTCTGCNCTTATGTAATTAC
AGCTATGTTGAGCGTTTTTATAGTACTGTGTATNGATGTATGATAGTGAATTTACTTAATTTATGCTATAAATACTTTAGTATGTTTGTATTCTTGTATC
AGATGTATGTGCTCGATTAATATGTGCTACGCGTGATTTTGTACATGTATCTCACACTGCGTNTGTTGGTNATCTNACGTGATATCTATTAGTCGATGTA
GTGTGATCTTGTGCTCTCTTATGTTGTACTACACGGAGTCCGCAGAGCACTCGTTGCTCATCTGGANTGTGCATGCACACAGTCCAANCACGCATACTCN
CGCGTTGTAGCTGTANTNTAGTCATGTATACTGTGACAGTATACTATTAGCGCGCGCTACCNCTAGAGAATGAAAGNAGATAGTAAGATGCTATAGTATG
TAAANGAGGAGAANAGTGAGAGATAATGATTGAGGAGTGTATGATAGTGTAGTGATTTGAAGTGATATGTGGAAGGAGAGGTGTGGTAANTAGTGATGTG
GGATTNGCGTGTATATGAATTGGTATTGATGAGTACTGTTATGTGTGGTATACGTGTAGCCTGAAGATATACNGGACGANTACGTACTCTCTGTGGCTGA
CTCTACGATGACGCTACACACGAATGATGTTGTTGATTTTGTNCTCGATGGTCCTGGATCTTTNCGCGCGGTGCTGTTGCCTCATATGTTGCTCTTGATT
GGATGGTCTATAGGATATTATTCCGTGGNTGTAATATTCATTGTAAGTACTCGCCGTCAAGTACTAATCTGAATGTCTTGACCGCCACACTCGTATGTTG
CTANCTTGCATATAAATGACGATCTTACTCTACTANCCGATATCAATNCTTTCGACGATCGATACTCTCACATTTGTATCACTGTCATTGTATTGTACTT
TGTATGCTCTTACTGATTGTCTANCTTGGATCATTTTGTATTTATATCTTGTTGTCTATTNTATATTACATTCATGATGTCTATATAGGACTAGTACTAA
CTTTCGATGTATCTAGATGCTGATGGATAAGCCACACGTCTGTGCAGCGGTAATTCTGCTCTATAGTCCTGCCTTGGTTATATGATCCCATATTGACATT
TTATAGTGATGTGTTAGTTAATTCTTGTCTGCGTCGTTCTTGTATGTTGTAGTTATAGACTCATGTANGTACGGCTGCCGTGTGCGTCGTTGTTCTGTGT
CTCATAGACAGATACTTTCTGCATCCTTTCNGTGAGGCTGTTA
>LE_HBa0136J01_SP6_69936 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0136J01
Clone
Clone name
hba-136j1
LE_HBa0136J01
C03HBa0136J01
P136J01
Clone type
BAC
Contamination
none
Estimated length
54,717
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found