Clone Read LE_HBa0138E18_SP6_70498

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0138E18_SP6_70498
Primer
SP6
ID from Seq. Facility
LE_HBa_138_E18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1738 raw
Sequence
>LE_HBa0138E18_SP6_70498 (raw untrimmed)
CTAGCAGATCGAGGCGAGCGACGCGGAGGAAGGCCGATCAGAGGAGAGAGTAGATGAATCGAGAGCGACAGTCCAACAACCATGGTATCGACAGTGTTAG
ACGCTAGTNAGTACTNACGACTCGNGACTGTACTCATACACACGATGTATTACGTCCGCCGTTGTAAAGTGCACAATGCTATAGACTAACAAAATATTAA
ACGATAGAGGACGTCTCTGTCTTCCACTATGCCGTCTCCACACACACACATGCTACTAATGCGCTACACAACCACAAGCATAACTATATAGTGCCCTGAC
AGCAGACCGAGGAAGAGGTGCGCGTGACAGACTGTGTATGTCGCGGTGATCCGCGAACAGTCAATTATTTANCGATCTCTGATACTACGCTGTATGAGTA
TCGACTGAGTAGCCCGATTATACGACATACCTGTACAGGAGTGCCGACTCGCTCGTCTCACGAGCCGTGACGTATGGCGACGNGCACTACGACGCTGTAA
NCTTGCGCTNTANCANGCCNCTACTCTATGTNGGACGCNATATGCATCGCTTACTATCGACCGCTTACAAGCACNCACACTCACGACACTNCCTATCATC
ATGCTTACTCTGATCGCTCTGCTCTACTGCTCACTACTGTCACTATACGGAAATAGATAGTCGTATGNGTATTAAATCTACAGTACANTATGATTGTNCG
TTTGTATGTCTGCAATCTGCTCCTATATACATGNGCTTAATCANGCGCGACATGCTGAGGTGCGGCACAGACGCTATGGGCACACAGATATGANGATGCA
CAATAGCGCGATAAATAGTAGCATGTATATATAACTCNCGACTGCGCGCATGTGTACGACGACGCTACAATACTGTCTCCACTCACGACTGTTACNCTCA
CACTATGTATGCTGAGTGACGATTTGCTCGTGTATGTCATTCTGCTCGTGGATGTATCTCGTGANTCGTNGTCTTCTGACTACTTGNCAATACAGCTGTG
CCTATGTGCTACTGATTNCTGATTCACANANCTATCTTACATNCTATATCNTATATACTCTCTGTACATANAACTTTATATCTGATCTCANTCTAATACT
ACTGCTATTCCACTATACACNCATTGACGTGTATACATTNAATGATGCCTCACTAGCGTGCTCCATGAAGCTACTGATTGATTTATGTCACATCCGCACG
CATCTCGCANGCATCATATACGACTTGCNTNCGATACATGACCTATAGTCAGACTGTACCACATGAGACTGAGCGATGTC
ATCACTGAATCTGACATAAA
ACACTACACTACATACCAGCTTATACGACGCGCACACATACTACGTGATACGTCTTATCCACTANCAGTTCATGTACTNATACGACTAACTAACTATNGA
AGCAACATCCATACGCGTCTACGCTGANCTGAANATTATCTATAAGAATTGCGAATCGAGGATACGATCCTGAGATGATGAANATGCGCGGACAGCACCA
NAACATAGAAGCGATAGCGGACGCATGATGATCGTGNAGATAGNTANCCTGCATNGTACTGTGGAGCTATTGCATATACTGATCTACGACTGNGCGCACT
NTACGACNCACTNAGTCACATCTGATGTTAGCGTNGAGCATCGCACCGCGTGCTNANGNCATACGCNTACGNCGNCAGNATGCGCTTACGNCCTGTACGT
CAATAACTGCATTGCATAGTGTCTGCACTGTATCCACG
>LE_HBa0138E18_SP6_70498 (trimmed for quality and cloning vector)
ATCAC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.792295
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0138E18
Clone
Clone name
hba-138e18
LE_HBa0138E18
P138E18
Clone type
BAC
Contamination
none
Estimated length
55,294
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found