Clone Read LE_HBa0138I02_SP6_70658

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0138I02_SP6_70658
Primer
SP6
ID from Seq. Facility
LE_HBa_138_I02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
568 trimmed for vector and quality, 810 raw
Sequence
>LE_HBa0138I02_SP6_70658 (raw untrimmed)
CCGTCGACACTGGCAGATCGAGTCATTTGAAGAGCTTGAAACTCTTTCTCCAGTTTTGATGGGTCCTCTCATGTTCGGGGATGCTATATTTCGTATTCTA
GCTTACGTAGATTTTGGTAGTTTTAAGAATACGCTATTTCCATTATGTTCTTTGAATTCATTTGTAATAAGACCTATATGGCATATTAACTATTATTGGC
TAAGTTCAGATTTGCACTCTTTAGATGGTTTCTATATATTTGAGACAATATTTTTAGAATTCGTATGTTTTTATAAACCTTAAGTATGAAGTCTAAGTAT
ACTTTATTGGTCTATTAAAAGTTTAAATATTTCCGAAAATTTAACTGTATGTTTGTGATGAAAGATAAAAAGAGGCTTGTTTGCGACCTCTGAGAGGTTA
ACGACGCCGATCGCGTTCGGATTTAAAAATTCGGGTGTGACATGAATACACGGAAAATGATACTTATTCTTCACCATTACCTTGTTCAACTGTCTGTAAT
CAATACACATCCTCATAGTCCCATTCTTCTTCTTCACAAACAATACAGGGGCACCCCAATGTGACACACTGGTCAAATAAAACCCTTACTCAACAAATCC
TGTAATTGATCCCTTCAACCTTTTTCACACTCTGCTAGATCTTTACGGTATGGAGAGATAGAATTTGGCTTTAATTACCGGCTCCCAATCAATATAAAAA
TAAATCTCCCTATAGTGGAGGAACACCTGAATAAATAGAAAGTAAATCCTTCAGGTATTCTCCTCAAACCTCGGTAAAAAAGTCCACGGGTAGGGTGGTC
TAACCTCATT
>LE_HBa0138I02_SP6_70658 (trimmed for quality and cloning vector)
TTGAAACTCTTTCTCCAGTTTTGATGGGTCCTCTCATGTTCGGGGATGCTATATTTCGTATTCTAGCTTACGTAGATTTTGGTAGTTTTAAGAATACGCT
ATTTCCATTATGTTCTTTGAATTCATTTGTAATAAGACCTATATGGCATATTAACTATTATTGGCTAAGTTCAGATTTGCACTCTTTAGATGGTTTCTAT
ATATTTGAGACAATATTTTTAGAATTCGTATGTTTTTATAAACCTTAAGTATGAAGTCTAAGTATACTTTATTGGTCTATTAAAAGTTTAAATATTTCCG
AAAATTTAACTGTATGTTTGTGATGAAAGATAAAAAGAGGCTTGTTTGCGACCTCTGAGAGGTTAACGACGCCGATCGCGTTCGGATTTAAAAATTCGGG
TGTGACATGAATACACGGAAAATGATACTTATTCTTCACCATTACCTTGTTCAACTGTCTGTAATCAATACACATCCTCATAGTCCCATTCTTCTTCTTC
ACAAACAATACAGGGGCACCCCAATGTGACACACTGGTCAAATAAAACCCTTACTCAACAAATCCTGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.945862
Expected error %
0.360272
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 78 E Value 8e-14 Identity 78.70% Align. Length 157bp (27.64%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 78 E Value 2e-13 Identity 26.20% Align. Length 140bp (24.65%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0138I02
Clone
Clone name
hba-138i2
LE_HBa0138I02
P138I02
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found