Notice: SGN will be briefly unavailable for maintenance. Apologies.

Clone Read LE_HBa0138L01_SP6_70800

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0138L01_SP6_70800
Primer
SP6
ID from Seq. Facility
LE_HBa_138_L01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1171 raw
Sequence
>LE_HBa0138L01_SP6_70800 (raw untrimmed)
GAGCGTGAGGAAGCGGACACAGCGGAGGCACGCAGTCCCTGGTGAGGGAGAGAGGCAACGAGGGCGGAGGGAAGGCGAAGGAGAAAAGGCAGAAGGAGGG
GAAGAAAAGGAAGCGATGGGAGGAAAGGCGCATTTAAAGGGGGCCGCCCCCAGAGTCATGCAGGGACAGAACCTACAACAAAAGGACCCCCCTTTAAAGA
GGAGGGCGCCCGCAGNGAAGCAGAGAGAGGAGAGCGGGAGCGCAGACCCAGGACAAAGACGAACGAACAGGGACACGAAACAAAGGGCAGGACGCGACAC
AACGCGCGAGGAGAGGAAGAAGGGGGGGACGGGGAGGTGGAGGGGGAGAAGCGTGG
GGGGGGGGGGGGAAGAGCGAACTCCGCGAAAACGGAATGGCGGT
GGTGACGAGAGAGGAGGCGGCGGGGGTGTCGGGACGACACGAGAAGAGGGAAAGAACACAGTCGAGCGGCAGAAGATGGCGAGGGCGCGGGCGCAGGCGA
GTAGAAGGCTTCTGAGGGGCCGCACGGGGGACGAAGACGAGGGAACGCCGCAAGAAGACGGTGAGCGCGGGAGAAGCGGGCGGAGGGTAAGAGGCGAGAG
AAGGTGAGGGCACTATTTTTTTTTTCGAGGGGGGGACGGAGCGAAGAAGTAGCACCCCGGGGTGGGTGGGGGGGGGGCGCAGAACGCGAGAGGCCGACGC
GAGGGTATCCGCGGCAGAGGAACGCAGTCGCTGCCGGACAGTGTCGAGAGGGGGGCGGGGGAGGGGCGTGGGGGGGGTGGGTGAAGAGGAAAGGGGCATC
GGGAGGGGGAGGGCGGACGGGATGAGTGAGAGGAAGGACGGGAATGTAGGGGGAGTAGGGAAAAGAGGAGGGAGCGGAGAGCGGGGCGACAGCAAGGGGA
GGAAACAGGGGGGAAGAGAGCGGAGAAGGCGGAGGAGAGCGGGCCGGAGCCGGGGAGGAGCGCCGATGAGGCAGAGCGGGAAGGTGCGGAGAGAGGAGGG
AGGCGGAAAGGGACCGCAGGCGGCGANAGAGGCGCTGCCGACGCAGTAGGGCGAGGGTGCGGCAGGGGGGGGGAGANGCGCGTGCAGAGGGGGAAGGGGA
GGAGAGAGAAGAGAAAAGGAGGTGAGGGAGTGAGGGGCGAGAAGGGGGGGATGAGAGAGAGCGGACGCAGG
>LE_HBa0138L01_SP6_70800 (trimmed for quality and cloning vector)
GGGGG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.543458
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0138L01
Clone
Clone name
hba-138l1
LE_HBa0138L01
C03HBa0138L01
P138L01
Clone type
BAC
Contamination
none
Estimated length
81,484
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found