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Clone Read LE_HBa0154J16_SP6_75342

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0154J16_SP6_75342
Primer
SP6
ID from Seq. Facility
LE_HBa_154_J16-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1004 raw
Sequence
>LE_HBa0154J16_SP6_75342 (raw untrimmed)
CTCTGGTAGTGCGTATGTTTACCTCTCCTATTTCGAGGATTTCGNCAGTATTTAAGGTGGAGTCTCCCCTCCTCATCAAGTTTCACTCTACGTTCNACTA
CCACATTGCATTATTTTAGGCGCATTGTCATACACTAGGTGCTTCTACTTGTGCTATAGGAGTGGACGATAGCATTGTTCCGTGAGATAGTTGTTGATAG
TGGGGTCTACTTAACTATTTGACATCCATGTTGATTCATCAGAGGTGCAGGGAGCACGGTGCTCGGTCATCACAT
CACTCTCACTTGCCTCTCCATCATA
CACAGATCGACCCGACAGAATGATTACCTGGGCGCGATCGGCACTAACTTCTCCGAGGGACGCGACCCACTCTTGAACAACAGAGCCCGATCTGTATGCT
CGGACGCACGCAGCCACCTACTATCGCGAGTAGAGTGTGAGTTGTAGATGAATTGGNTGAAGATACGTTATATTGTTGTAGATTCGTATGAATAACAGTA
TTATTATGATGTATACATGTACCTCATGCGACCTCTCTCATTCGAACGATGTNCTCGTCAGTCTGTAGTGTTCGCACACACTGTCTAGGCGGTGTTGGTT
ATGNGTGTATGGTATGTAGTGTCTCGGAGTCTCGATGGCGTCTTAATCTGCTATCTTCGTTCTAGAGCTCGTCGTACATGTGCGTGCGTTCTCTAGTTGT
TGTTTGTATCTATGTGATTATGTGGCACGTATATAGAATCTGTGTTGCGACGTTTATTATTTGCACGAGCTAGGCTGTTCTGTGCGGATATAGAGTGCAT
GAAATTCTAGAAGTACTGTGTGTTGAACGTGATAGTAGCGGAGTACTACGATTCAAGTTGTTGGATTACTCACTTATCTGCTTTTCAGTTTTACGTTTCT
AGATTCACTCTACTCTTCTTACTTTGCTTATAATCTCAGCCTGCGCTCACTACTGCATTCCTTCCTTCCATGTGTTGATACTCCAGCCCTTGCGATTTAT
CATC
>LE_HBa0154J16_SP6_75342 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.11613
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0154J16
Clone
Clone name
hba-154j16
LE_HBa0154J16
P154J16
Clone type
BAC
Contamination
none
Estimated length
81,729
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found