Clone Read LE_HBa0160C24_T7_76559

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0160C24_T7_76559
Primer
T7
ID from Seq. Facility
LE_HBa_160_C24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
805 trimmed for vector and quality, 865 raw
Sequence
>LE_HBa0160C24_T7_76559 (raw untrimmed)
TTTACCCTGGGCCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGTGCTAAATACTTGTAATCCTTTTACACTATCTTGATGCATAGTA
ATGAAAGGACATTCCCATCAAGAAGAGACAATTACCTGGGAACCAGAACCAATGCATGGATCACTTCCCCGTAAACCATCAACAAGTTCAGTATATAGCT
GTTCCTTTGGAGTTGCTGCCGGTGCCCCAAAGTATGAGAACTCCACAACATCAACATCACACCAAACACCACCTGGTCCCTGCCCAATTACAAAAGATTC
TCAAGCCCAATAGTATTGGCAGAACAGTTAAGACTCCAGAAAAGTCAATGAACCATAGCTGGCCCGGCCACCACCGTTATAAAAAGAAACAAAAAGAAGT
TAGTGAATCTACTCAACTTTAGTGCATGTTAATGCAATAGATCCTATATCAATTAAGACATGGGAATTTTTGCCGTTTGGTGAAAGACTTTTACTAGTTA
ACCATGTTCCATGAAGAACAAGGACTGTTAGCAGAATAAACACATAAAGACAAAGGAAAAAATTGATAGAAAAGCCTGAAGTCATAAGTGCCACCTAAGC
AATAAAATCATTACACTAAAACTGTTTATGCTAAATGCAAGTACAGGGGTTCCAACAAGATTAAACCTCAAGAAAAGCCGGTAGACATTGGACAAGGTTG
AGCCATTGCCTGTGAACTTTTCTGGCAACAAAGACAAGAATAGCTGGTATCTCTGTCAAAGCACCTCGCCCGGAACGAAATCCGATTGCTGTACCAAGAC
TAAAGCGACCCAAGTTTTTTTGCTATGAAATGCTCAAATGGTCATAACTTCAAGCAATGTGGTAC
>LE_HBa0160C24_T7_76559 (trimmed for quality and cloning vector)
AGCTTAGTGCTAAATACTTGTAATCCTTTTACACTATCTTGATGCATAGTAATGAAAGGACATTCCCATCAAGAAGAGACAATTACCTGGGAACCAGAAC
CAATGCATGGATCACTTCCCCGTAAACCATCAACAAGTTCAGTATATAGCTGTTCCTTTGGAGTTGCTGCCGGTGCCCCAAAGTATGAGAACTCCACAAC
ATCAACATCACACCAAACACCACCTGGTCCCTGCCCAATTACAAAAGATTCTCAAGCCCAATAGTATTGGCAGAACAGTTAAGACTCCAGAAAAGTCAAT
GAACCATAGCTGGCCCGGCCACCACCGTTATAAAAAGAAACAAAAAGAAGTTAGTGAATCTACTCAACTTTAGTGCATGTTAATGCAATAGATCCTATAT
CAATTAAGACATGGGAATTTTTGCCGTTTGGTGAAAGACTTTTACTAGTTAACCATGTTCCATGAAGAACAAGGACTGTTAGCAGAATAAACACATAAAG
ACAAAGGAAAAAATTGATAGAAAAGCCTGAAGTCATAAGTGCCACCTAAGCAATAAAATCATTACACTAAAACTGTTTATGCTAAATGCAAGTACAGGGG
TTCCAACAAGATTAAACCTCAAGAAAAGCCGGTAGACATTGGACAAGGTTGAGCCATTGCCTGTGAACTTTTCTGGCAACAAAGACAAGAATAGCTGGTA
TCTCTGTCAAAGCACCTCGCCCGGAACGAAATCCGATTGCTGTACCAAGACTAAAGCGACCCAAGTTTTTTTGCTATGAAATGCTCAAATGGTCATAACT
TCAAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.966406
Expected error %
0.677836
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g35155.1 Score 90 E Value 1e-18 Identity 81.90% Align. Length 700bp (86.96%) Frame 1
68415.m04312 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g45030.1 Score 80 E Value 1e-15 Identity 81.30% Align. Length 656bp (81.49%) Frame 1
68418.m05521 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||C84765 Score 90 E Value 6e-17 Identity 81.90% Align. Length 700bp (86.96%) Frame 1
hypothetical protein At2g35150 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN12976.1| Score 90 E Value 6e-17 Identity 81.90% Align. Length 700bp (86.96%) Frame 1
unknown protein [Arabidopsis thaliana] gb|AAM14975.1| expressed protein [Arabidopsis thaliana] ref|NP_565798.1| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0160C24
Clone
Clone name
hba-160c24
LE_HBa0160C24
C02HBa0160C24
P160C24
Clone type
BAC
Contamination
none
Estimated length
113,676
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found