Clone Read LE_HBa0164H06_T7_77531

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0164H06_T7_77531
Primer
T7
ID from Seq. Facility
LE_HBa_164_H06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
8 trimmed for vector and quality, 1731 raw
Sequence
>LE_HBa0164H06_T7_77531 (raw untrimmed)
AGTTGAGAGTGCTGGGACATCCGGGCGGGGTGAATCCTTTCTTTAAGAAGTACCGGACCCATCGCCACGGGGCATTGACAGNGTCCTGTGTTGTGACACT
CTGTAATTAATTAAGTGCGATACCCCCCTCTCTATTGTACACGTAGTAGCACTAGCTACGACCCTACATACGTCAATCATGCTCAGATCGCGTATAGCGC
ACTCGNCGTGTATGTACATGACACACAATACGACATCGTACACGATAGAGCAGAGCACAGCATGTTAATGCATGTGCGAATGCGCTGCTCGTATGAGGTG
ATANGAGTATACTACGTAGCATACGACAAGTGANATGCGAGATGTCGATNGTANATCATCCACACNGACAAGCAAGTTGACCGTTCGTCATGGTAATAGT
CNTNGNCGCACATTTATNTAGTCATATATNAATCGTACTCGCTTCAATACCNTCTAGACAGACATATGTCTCCACTTGCATGTCAGCGATTAGGAACCGC
TCTGCCTATCGCATGAGAACATGAATACTGTCACGTTTACATATAGCANATACACATGTCCAGTCNGNAGAGATGTAGACATGCCACGAGCTGTTAGCTN
TGACTAGAGCTGGACGAGTAGATGCTCACACTCATGCGTCTCGNACTGGATGCCATGCATCGTNCATNTAGTAGCNAGTCGCATACACNATCACTAGCNA
CGCAAATTGCGTAGCGTCAATTCGTGCGCCACANACAGATAATNATCTANANCNATCGTAGGCNTACGTTAGCTCTAGCAGTACGTGTCGTCATCTATAC
TCATGCTAGCATGTGCCATCTAGCTCACAGTACTTTNAGCTANCATNTCGCANAGCGATATGNTATGCGTACTCGACACGATCGTCGCTGATTATGTGTA
TATATTGTGCGTGCGCCATCACGTACGTATCGACGGACCGGTACTACTCGAGCAGCTATCACATTTNTNGNATTATCAGTGATGAGGTGGGGACATGTAG
GGCGCATGTCACGTACAGGAACCTGCTTTGGGACTCNTNCACTCATTTATACGCACCGAGTCCTATAGTGTAGTAATCGGTTCTTGAATACACATACGCA
CAAGCGCTTCCGCACATAGTTNCATTTGCACTGCAGNACGCCTGGCATCTTTCCAGAGTATAATGATTAGGCTGTCGCATGACGAGTCGTTCTAACTATC
ATTGGACGTCGACGCCCGGTCCACTCCCATTAAGAGGACTNGAAACAATCANCAGCACAGGCGACTCGGTGATAGACGCGCTACCTCCTCCTTTACAGAT
ACTCCCGAGACGCACCTGACTCTCCAGCCCTGGAGACCGTGCCTCGTATCATACAACTACTCTTGACATCAGGATTGAGATCGCACNCGCAATCCTCCGC
TTCATACTGAGGAGAGAATTCTCTCTCCTAATGAGAGCTCCATCTACACACTTATGTTCATGTGCTCNCGCTTGTCCANCTCTCCCACACTGCCTCAGGT
CTCTTATCAACGAACNCTGCCCACNCGGGCGACTATGNATCNACAACTCCTCCTTGTGCATNCCCACTGCTACGCGTAACACCCACTATAATATTCTGTT
CACCNATCTGCTCACATTAGATNATATGTGATAACTGCTATCTTCAATTACACAAAATACTCCAACTTGTGCAATTCTATCGCTACAGCTACGCTGGTAC
ACATCTGTCGGCAAGCCCTNCACTCTACTCT
>LE_HBa0164H06_T7_77531 (trimmed for quality and cloning vector)
TAGCATAC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.436871
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0164H06
Clone
Clone name
hba-164h6
LE_HBa0164H06
P164H06
Clone type
BAC
Contamination
none
Estimated length
117,276
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found