Clone Read LE_HBa0164J03_T7_77621

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0164J03_T7_77621
Primer
T7
ID from Seq. Facility
LE_HBa_164_J03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
800 trimmed for vector and quality, 909 raw
Genbank Accession
DU067266
Sequence
>LE_HBa0164J03_T7_77621 (raw untrimmed)
GTTGAATCGGTACCGAGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCCCTTTTGACAAATCTCCTCTTGCCCTTCATGGGTGAAACTCTAAG
ATATACCCAATAATCTACTGTAAAACCTAACTCGCTTCTCTTAACATCTACATAGGATTTCTAGTGACTCTGCACTGTTTTCAACCATTCTTGAATCATT
TTCACCTTATGCATATCTTGATGAACTAAATGAGGTCCTATCAATCCAACTTCACTAACTTCAAACCATCCAATAGGAGATTTGCATCTTCTCCGATAAA
GAGCTTTGAAAAGAGTCACCAGGATGCTAGAGTTGAAACTATAATTTTTTTAAGACTTAGTGACAGGTCGGTGATCATACCAACTTCTCTTGAAGTCACC
CACACAAGCCATCAACATATACTCTAAGGTCTGAATAGTGCATTCTGCTTCCCCATCTTCCTGAGGATGAATGGCAGTACTTAAGTTTACCTTTGACCCC
AAGCCTTTCTGGAATGACTTCCCAAATTTGGCAGTAAATTGTGCACATGTGTCTCAAATAATTGAGACTGAAACCCCATGAAGTCTTAACACCTCTTGAA
TAAAAATCATAACATAATCTTATGTTGAATAGGTAGTCTTTACTGGCAAAAAATCGTCTTATTTGGTCCTGCAATCTACAATCACCCAAATAGAATCATG
TTGCCTAGATACCTTGGAAAACTTGTGATGAAATCCATATTAATAATCCCCAACTTCCATATTGTAAGTTCTATATTCAGAGGCAAACCACAAGGACTTT
GCGAGCTATTTTAATTTGTTGACAATTTGGAAACTTTGCTACAAATGTTGCAATGTCCTTCTTCATGCTCCTACCCCAAAAAAACTTCCCTCATGTTCCG
AAACTCCTT
>LE_HBa0164J03_T7_77621 (trimmed for quality and cloning vector)
AGCTTCCCCTTTTGACAAATCTCCTCTTGCCCTTCATGGGTGAAACTCTAAGATATACCCAATAATCTACTGTAAAACCTAACTCGCTTCTCTTAACATC
TACATAGGATTTCTAGTGACTCTGCACTGTTTTCAACCATTCTTGAATCATTTTCACCTTATGCATATCTTGATGAACTAAATGAGGTCCTATCAATCCA
ACTTCACTAACTTCAAACCATCCAATAGGAGATTTGCATCTTCTCCGATAAAGAGCTTTGAAAAGAGTCACCAGGATGCTAGAGTTGAAACTATAATTTT
TTTAAGACTTAGTGACAGGTCGGTGATCATACCAACTTCTCTTGAAGTCACCCACACAAGCCATCAACATATACTCTAAGGTCTGAATAGTGCATTCTGC
TTCCCCATCTTCCTGAGGATGAATGGCAGTACTTAAGTTTACCTTTGACCCCAAGCCTTTCTGGAATGACTTCCCAAATTTGGCAGTAAATTGTGCACAT
GTGTCTCAAATAATTGAGACTGAAACCCCATGAAGTCTTAACACCTCTTGAATAAAAATCATAACATAATCTTATGTTGAATAGGTAGTCTTTACTGGCA
AAAAATCGTCTTATTTGGTCCTGCAATCTACAATCACCCAAATAGAATCATGTTGCCTAGATACCTTGGAAAACTTGTGATGAAATCCATATTAATAATC
CCCAACTTCCATATTGTAAGTTCTATATTCAGAGGCAAACCACAAGGACTTTGCGAGCTATTTTAATTTGTTGACAATTTGGAAACTTTGCTACAAATGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.956565
Expected error %
1.0928
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 279 E Value 4e-81 Identity 66.50% Align. Length 792bp (99.00%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 278 E Value 9e-81 Identity 66.10% Align. Length 792bp (99.00%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0164J03
Clone
Clone name
hba-164j3
LE_HBa0164J03
P164J03
Clone type
BAC
Contamination
none
Estimated length
91,417
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found