Clone Read LE_HBa0166L04_SP6_78486

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0166L04_SP6_78486
Primer
SP6
ID from Seq. Facility
LE_HBa_166_L04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
126 trimmed for vector and quality, 964 raw
Sequence
>LE_HBa0166L04_SP6_78486 (raw untrimmed)
CCCTTTTTTAACTGGGTANANTNCGCAACTTTGACTTATACATCCAGGTACCCTCACAAATTTTTGCATGGGTAACTTTTCCTTAAGGTTGCACTTTTGG
TGCATTTGCTAACTCTTGTTCCTTAACATCCACTTAGTTGTCTGACTTCTCTTCATGGATTTTGGCATGATTCTCTAAAAAACACGTCCTTGGACAAATA
AGATGGAAATTTGCAAGAGATCACTATTGAAAATCACGAAATATGTTTGAAAGAACTGAATGAAAACATAAAAGTGACAACGAGCCTAATATATATGCGA
GAGCAAAAAACATGCAAGAACAAATTATACATCCAGAAAAATATTTCTATTGACAATAAGAAAAAAATAGACTCGCGCAATAGGAGAACAGAACAATCTA
ATGAGAAGATAAGTAGAGAAACAAGCCTTAGAGTGTATATATACTAAAAAAAAATACACTATAAAGAAAATGTTTAAATCTTTGATTAGATTTATTTTAT
TCAAAATATCAAGTATTAAAATTCCATAAACAAGCTAAAGACAAAAACATCCTTGGTAGATTTCTAATATAGTAACATTAATCAGTGTGTTATGTAAAAA
GAACCAAAACGAACTAAGAAAATCAATTAAAACCCATACTCAGATCGCTACGACCTATATACACATACAAACTCAACAATAAACATCAACAATATATAAT
AAATACTAATAAGCACAAACCTACACTACATATAAAACATAACAAAAAACATTTTAAGTAGTTCATAATCGCTAAGATCAGAACACAAAGTTAAGATAAT
ACACATGAATTTACTAGTCTAACTTTATATGTATAACATATTGTAGGAAGTGAGAGACATATATATGTATATTAAATCCTTGTTTACTGTAATATACGAT
GATATATGATCTATAATACATCCAATAATTAACACTGATAACTAGACTACAAATAATCGCACAA
>LE_HBa0166L04_SP6_78486 (trimmed for quality and cloning vector)
ACAAATTTTTGCATGGGTAACTTTTCCTTAAGGTTGCACTTTTGGTGCATTTGCTAACTCTTGTTCCTTAACATCCACTTAGTTGTCTGACTTCTCTTCA
TGGATTTTGGCATGATTCTCTAAAAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.923113
Expected error %
0.478896
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0166L04
Clone
Clone name
hba-166l4
LE_HBa0166L04
C03HBa0166L04
P166L04
Clone type
BAC
Contamination
none
Estimated length
102,508
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found