Clone Read LE_HBa0016B10_SP6_78786

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016B10_SP6_78786
Primer
SP6
ID from Seq. Facility
LE_HBa_016_B10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1247 raw
Sequence
>LE_HBa0016B10_SP6_78786 (raw untrimmed)
AGTAGTAGCGTGCGATTATATGTCCATACTGCGTGTGATATGTATGATAAGAGGAGGAGCGGGGGTGTGGTTGTGGCGGTCGAGTACGTAACGATACTTG
TCTACGGCCGTTCGTCACAGCGCTGTCTGTGTTCCTGCTAGAGCCTAACTCCTACCTACTTAAGNAGAGGCGTGTGATATTCATATNCATNCTACGATTG
TTCGGGGTGCGTGTGTGCGTACAAGTTGGTGCGATGCTAGAATATGTTTGATTNTNTGTGTCGTATGACTACGCGCTGTNACTGTCGTGAACTCGTGACG
CCGCTGGATGATGGATCAGTGGACGANATAGTAAGTTGNCATCGACGCCGTACCGCGCCGCACGGCGCATCTATGCGACGCACCGTACTGCGCTACTTTC
GTCCGCCTTGTCGACTACGNTTTTACTCGAGCGTCTATAGTTCTTGCTACGCTCTGTGCACTTGGNGTGTGGTGACTACTTCATTGTNATACACAGGTAT
ATATGTTCTCTCGTAGCATCGACGTCTCGCAGATCGATCGATCGCANTNATATTTATCCTTGCTGCTNTNCTTCNCATATACTGTCCGCGCTGATCTGTC
TCCCCTCCACGTTGCCCGTCTGTCTGTGCGGCGTGCTGTCTGATATACATACAGACGCTNCGTTATATTACATCAGCACCGTCTCTGTCGCGCGC
TCGAA
CACATACTACTCACACCACTCATGAACAGAGAGNACGTGCGAAGTACGCACATNTATTANGATCTACATCTTGACGCAGACNACAGTGNTACTATGCCGG
ACTAGAGTACACGTATCTGCGACNAGTCGTCTGGTAGTGCGTATGAGATAAGTGCACGGAATAGATGATGTGACACGCACACAATAGACANGCATATGNC
ACACAGCGATGATACTACGCGNANGTACACGCNATATATAATACGATATGCCACGACGTATATCCGCCGGGCATCTACACNANATGNAGTNTTGNGAGTA
GATCGCATATGTCGTCACTGTCGCGCAGACTTTNTANGATGTCNTCCTGCTGCCTGCACGATCGCAGTNGCGATGTCANTACTTGCGCATACTTCAGGTG
ATCATTNGCTGTCTCTACTATGATGTGATACCTGCACTGTGGTCCTANGTTGACAGATTGTTGCTGCGTTGCACTGNGCGCTGCGTNTCACGATGATGAT
GTTGCGGGANAGTCGCGACTGATGCCCGCTAACGCGCTCTTAATCGN
>LE_HBa0016B10_SP6_78786 (trimmed for quality and cloning vector)
TC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.3948
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016B10
Clone
Clone name
hba-16b10
LE_HBa0016B10
P016B10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found