Clone Read LE_HBa0016B20_SP6_78806

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016B20_SP6_78806
Primer
SP6
ID from Seq. Facility
LE_HBa_016_B20-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1769 raw
Sequence
>LE_HBa0016B20_SP6_78806 (raw untrimmed)
GCAGCTCGTAGTCCAGTGAACGNTATANCANTCGTCTACGCTATNGCGAGCAGCCTGCTGACGTNTGNGCTCGANCGCAGTAAAGCGTAGAGTNCGACCC
TGCTNCANCNTCTACTGACGACGGCATGNGNTNTGNTNGNTGCNGNCANATGCTGTTGCGCGTCTCAGTATCGAGACGCTCGAGCCGCATCTGTAACGAT
CAGATGTCGGCGCAGTCAGTACGTGAGTAGTCAGAGATCTCGAGAGAGATGATGNCGACTGTGATNTGAGTAGTGTGCAGTGATAGAACTGTCCCGTNCT
ATATACGAGCGANTNTGAGANAGTGGCTTNTAGAGAATGTAGCGNTATAGTNAGATATAGTGACTACANTGNANTNGCGCTATGCTNTGCGATNACGNGA
TAGCTGTGTTANTATCGTNCGCTAACGTNTCGCTGGCATGTGCGATTTNNACTGTNCNCGCTTNCAGNNGATGCNGNGNCGCGCCNCGCATGNCTNGTGA
GCGTATCAGGACGAGCTGGTGAGTGTAGTCGCTGAGCATCGCGCGCCTGTTCNCACGTGACACGTGATGTANCGCTGCTGAGAGACGCGTACTGTGACAC
NAGACATCAGAGCAGCTTNANAGAGCGTGCCGANTCGAGCNACCAGCGGTNAGCTGAGATTCGTGTGAGACNGCANTANCNANTCACATATCGCAGAGTG
CAGTAANGAGAACGCATGATGACCAGTAGNTCANATGANANTNTGAGCAGAACAGAAGCATGAAAGNCTNGGGACANATTCGANACNTGATNNGCACTNA
GTATATTNATTATTCTTGTANTCTACTGATATGCGATGACNATTTANCTCGTATATATNCNGCTATCAGATGACANNGNANCGTCATTGTCGCACGAGAG
TNGCAGCAGTGGAGGTNTNAGGATAGTGTGGGTANGACAGCGATGAGAGAGAGGNNNCAGAAATNNTGGTGCATGAGNTCGGAGATGNGTNGCNTANTGT
ANTNAGTGAGGGCTGNTGCTGATGAGGAAAGCATGTNGTGGTNGTCAGTGACGTGTCGTTNGACATNGTGTCGTGGCAGCNGAACNANTCTAGCCNATNC
TGCACTNTNCTCTACGANATGNTGCTANCGATGTGCTACAGTGAGTCGTCTACGCCATCNCNTAGCGTCTCGGACNAGTGCCTNGCATGCTATGATACGC
NCTGCTCNGTAGTACGTCGNCCGATGCATGTCTCGACGTGCGCANNTATCGATCCGTACATTTGGATATGANGTACNTGNTNGTNNAANCANGNTATTGT
GTGATCTNATTCGTGGACGAGTANTGTACGCTACTNACTNNGNTNTACAATCCTNGATNGTATATANACTCTATACNCAATCTGCTATACGACAACTNGN
ATGNANGACGGGNNCNGNANGANACNCNACNCGGNTCGTAANAGTGAACGTNCATNGACTGTACNGCGCNGTNCTCGACTAGTGACATCGCAGACTGTGA
CGGCANTAGANCANAGACCATGTCAAATATACTAGTGNNANTGACGAAGACTAANAGACGACGTAGNGTTGNGATANCGACGTGANANTGCGAAGNGNCT
GACANTGAGTNGTGCTGAGTNGATGACATNGATGTNGTCGCTGATNATNATNAGTTGTTAGTGTAANNGNCGATGNGTCGAGCNCANCGATNGTGATCAG
NGTATAGTATCAAATGAATACTGNCTAGTGGAATCAGAGCATNGNATGATANTCGACTCATNACTGATG
>LE_HBa0016B20_SP6_78806 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016B20
Clone
Clone name
hba-16b20
LE_HBa0016B20
C02HBa0016B20
P016B20
Clone type
BAC
Contamination
none
Estimated length
100,920
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found