Clone Read LE_HBa0016B20_T7_78807

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016B20_T7_78807
Primer
T7
ID from Seq. Facility
LE_HBa_016_B20-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 770 raw
Sequence
>LE_HBa0016B20_T7_78807 (raw untrimmed)
GCGCGTGACAGAGGCGGACACGAAGAGATGGGAAGAGAGGGGAAACAGGAAACGAAGAAGGAAATAAATTGGACGAAGCATATAGAGAGAGGGATGACTG
GGAAGAGAGATGTTGATCCCAGGAACGGAGAGCCTGAGCAGACAAGATAGCGACGCGAGCGGTAGTCAGCCGGAGAGAAAGGGAATAAAGGAGGAGCGGG
GGAGAAGACGGAAAGGTATGGGAAAGAGATATGTGGCGTGTTGAGAGCTCTTATTTTTCCTCTGCTAACGGGCAGGAGAGCAGACCAGATAATTCAACAA
CGAAGTTTAACAAATATTATATATTAAATTAGAAAGAGATCGCCCAGGCGTCGAAGCAGTCGGGAGGGCGAGCCCAAGCAGAACCCGAGGGAGAACGACA
AAAAAGGGTTGAAAAGAGGACACGATGGGAAGAACGAAGAGAGAGAGGATGAGGGATGCGTGTCTGTTGTATTGTTTATGTGTTTGTT
TTTTTTTGCGTG
GGTGGTTTGTTCGTCCAGGGAGCGGATGGTCGAGGGATGGGGTCACGAGACATATCATAAGAATCAGATGTAACGGAGAACAACGCACAATGATCAGGCA
GAAGCGAGGCGGAACAAGTGTCGAATGGTGTACAAGATTATGGACAAGTCGAACATGTCAGACAATGTAGATGCTCCTAGCACGCGTAATGCGCGCGCTA
GGCGCTGCCTAAATTATGGCACGGAGTCTGTGGAAGTNATACGTAGACATATATGATGGAAAGAGAAGAG
>LE_HBa0016B20_T7_78807 (trimmed for quality and cloning vector)
TTTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.79022
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016B20
Clone
Clone name
hba-16b20
LE_HBa0016B20
C02HBa0016B20
P016B20
Clone type
BAC
Contamination
none
Estimated length
100,920
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found