Clone Read LE_HBa0021C10_SP6_79602

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0021C10_SP6_79602
Primer
SP6
ID from Seq. Facility
LE_HBa_021_C10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
13 trimmed for vector and quality, 1650 raw
Sequence
>LE_HBa0021C10_SP6_79602 (raw untrimmed)
TTTGTGGTGACACGCTATTAAGGNAAATAACCTTCCAANAGGCGTATACATGGATCTCTCTCTTCCATACATGTCCATGCTGTCCGACTACATACTACTT
GCTTAGTATCCAGATGCAGATATATCAACACCGCATACTTATCTCANGNTGTGACTNTATACTAACTATATATCTACATCTACTATACATAGACCACTCC
TGCATGTCTACTACTTATAACACACGTAGATTAGTAGAGCTAATATTAACAGTCTCATAAGATGAATAATAGATACGTACTAGCGACNACAATCATAGTA
CAATCTCTCTATC
TTGAGAATGTGATAACTTGCGAATAGTGATATGAGCGCATACATNTGTCTNACGTCTCTCACGCGTGTAGTTCACGATATGATGTAT
CGTGATACATATGTATCTAATGCGACATCTCTCGNANCTTAGAGCGTATCTCAGTAATNATTNAGGCCNGNCNANCNTGTAANTNCATGANTCTCTACAN
ATCAGACTCATCATGATCATATGATTGCATCGTATCAAGCTATAGAATACAGTACTCAGAATCTCGCTAAGCCACATTGCGTGTACTGTGCCNCGGCATC
GACTCTTCGCTTGTATCCGCACATCGCAGCTACNGCATTGACACATCATCTGCAGCAGTGTTACTCAGCATTCGCTGTCGACCTCGACNTCCGCNTGTGC
TCTCTACGNAGGATCTCCTACGTTAAGTATCGTGCTACANTCTCCTGTGCGTAGTATACGAANGTATCATAGTTTAGGAACAGAGCTGCACTATCGCTCG
TAGGCTCATATATTCACCGATGTCAACAGCATATGTATACGANTCATATATGGNTCAGAGTCTATCATATCTAANCGTACTAGTGTTATATTCCATATAT
ACTCTCGCGTCATAGACTTGTCTGTATAAGGAATACTCTTAGCGATCTCGCATTGCCTGCATCTGCGCCTCTCGAGCCCATTGGCACCTCTAGTCGAACC
TGCGCATCACTGNGACACGATGTGCGAGTGTCTCAGTTGCAGTCTCTTCGCATGTTCCAATGCTTATTCTACAACAGTGATAATTCGCTATATACTACTT
CGNTNGTGNCNGTACTGTGCAACCATGTAGCTGTNGTAATCGTGTGAGGTACGTCCTTTTATCGATATGATTATAGTATTGACGTACCGTCGTGAGAATA
GACTCATCTAGTTCTCAGATGTGATTATCGGTTTAGGATGCACACATATGAAGAGAACCGATCGGTTNAGCAGTCACTCCTATCAAACGATACTAAATAC
GGTNTACGCTGTGGAAGGAATAAATTATACATAGTAATATGTAATGTACTTGCGTGTAGGAACAATATGTGATTCTAACGAGTATTGCCCGTGGTATATA
TGATACGTATTAGATACCTATTTTGGCGTATGCTCTATCCTATATGTATTTGTATTATGATATACTGTTGCACTACTAAATATATTACCTCTCTGCTGCG
CACTATCAAGTGAGGTGCTGTACATCTGGAAAGGTGACTTATACACCTCTCTTCGGGAGTTAATGTAGCACGTGTATCCATCAGAATAATATGTANGTAT
TATACATGCGTACAGTATACGCTCTACTCGTATATTGTCTTGTNCCTCAN
>LE_HBa0021C10_SP6_79602 (trimmed for quality and cloning vector)
TTGAGAATGTGAT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.689478
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0021C10
Clone
Clone name
hba-21c10
LE_HBa0021C10
P021C10
Clone type
BAC
Contamination
none
Estimated length
145,249
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found